HL_8P09_023

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_023 not in the Motif Atlas

Homologous match to HL_8C3A_210

Geometric discrepancy: 0.5623

The information below is about HL_8C3A_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08554.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P09|1|2|U|881
8P09|1|2|A|882
8P09|1|2|U|883
8P09|1|2|U|884
8P09|1|2|U|885
8P09|1|2|U|886
8P09|1|2|G|887
8P09|1|2|U|888
8P09|1|2|U|889
8P09|1|2|G|890
8P09|1|2|G|891
8P09|1|2|U|892
8P09|1|2|U|893
8P09|1|2|U|894
8P09|1|2|U|895
8P09|1|2|C|896
8P09|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N

40S ribosomal protein S11