HL_8P09_024
3D structure
- PDB id
- 8P09 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 48S late-stage initiation complex with non methylated mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P09_024 not in the Motif Atlas
- Homologous match to HL_4V88_206
- Geometric discrepancy: 0.1292
- The information below is about HL_4V88_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8P09|1|2|A|953
8P09|1|2|G|954
8P09|1|2|G|955
8P09|1|2|U|956
8P09|1|2|G|957
8P09|1|2|A|958
8P09|1|2|A|959
8P09|1|2|A|960
8P09|1|2|U|961
8P09|1|2|U|962
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain H
- Ribosomal protein S5
- Chain Q
- 40S ribosomal protein uS11
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