HL_8P09_033

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8P09|1|2|U|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_033 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1311

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8P09|1|2|G|1362
8P09|1|2|U|1363
8P09|1|2|U|1364
8P09|1|2|A|1365
8P09|1|2|A|1366
8P09|1|2|U|1367
8P09|1|2|U|1368
8P09|1|2|C|1369

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein eS17