HL_8P09_036

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_036 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.1848

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8P09|1|2|C|1560
8P09|1|2|G|1561
8P09|1|2|G|1562
8P09|1|2|C|1563
8P09|1|2|A|1564
8P09|1|2|G|1565

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein uS13

Chain V

40S ribosomal protein eS19