HL_8P09_037

3D structure

PDB id

8P09 (explore in PDB, NAKB, or RNA 3D Hub)

Description

48S late-stage initiation complex with non methylated mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

8P09|1|2|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P09_037 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.1611

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

8P09|1|2|A|1609
8P09|1|2|U|1610
8P09|1|2|U|1611
8P09|1|2|G|1612
8P09|1|2|C|1613
8P09|1|2|A|1614
8P09|1|2|A|1615
8P09|1|2|U|1616
8P09|1|2|U|1617
8P09|1|2|A|1618
8P09|1|2|U|1619
8P09|1|2|U|1620

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein uS19

Chain U

40S ribosomal protein uS13

Chain e

40S ribosomal protein S29