HL_8P17_011

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8P17|1|1|G|329, 8P17|1|1|A|330, 8P17|1|1|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P17_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0819

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8P17|1|1|G|327
8P17|1|1|U|328
8P17|1|1|G|329
8P17|1|1|A|330
8P17|1|1|C|331
8P17|1|1|A|332
8P17|1|1|G|333
8P17|1|1|C|334
8P17|1|1|C|335

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain U

50S ribosomal protein L24