HL_8P17_076

3D structure

PDB id

8P17 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E167K RF2 on E. coli 70S release complex with UGG (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P17_076 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P17|1|2|A|320
8P17|1|2|A|321
8P17|1|2|C|322
8P17|1|2|U|323
8P17|1|2|G|324
8P17|1|2|A|325
8P17|1|2|G|326
8P17|1|2|A|327
8P17|1|2|C|328
8P17|1|2|A|329
8P17|1|2|C|330
8P17|1|2|G|331
8P17|1|2|G|332
8P17|1|2|U|333

Current chains

Chain 2

16S RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS16

Chain y

Small ribosomal subunit protein bS20