HL_8P2F_012

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

8P2F|1|A|A|372, 8P2F|1|A|A|373, 8P2F|1|A|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.079

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8P2F|1|A|G|370
8P2F|1|A|U|371
8P2F|1|A|A|372
8P2F|1|A|A|373
8P2F|1|A|U|374
8P2F|1|A|A|375
8P2F|1|A|A|376
8P2F|1|A|U|377
8P2F|1|A|C|378

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24