HL_8P2F_029

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8P2F|1|A|A|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_029 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.0908

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P2F|1|A|C|1108
8P2F|1|A|U|1109
8P2F|1|A|U|1110
8P2F|1|A|A|1111
8P2F|1|A|G|1112
8P2F|1|A|A|1113
8P2F|1|A|A|1114
8P2F|1|A|G|1115
8P2F|1|A|C|1116
8P2F|1|A|A|1117
8P2F|1|A|G|1118

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Elongation factor G