HL_8P2F_101

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8P2F|1|a|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2F_101 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0986

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8P2F|1|a|G|1100
8P2F|1|a|U|1101
8P2F|1|a|U|1102
8P2F|1|a|A|1103
8P2F|1|a|A|1104
8P2F|1|a|G|1105
8P2F|1|a|U|1106
8P2F|1|a|C|1107

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S2

Chain h

30S ribosomal protein S7