3D structure

PDB id
8P2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
GGUUGGAAAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P2G_056 not in the Motif Atlas
Homologous match to HL_5J7L_188
Geometric discrepancy: 0.2234
The information below is about HL_5J7L_188
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.4
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8P2G|1|A|G|2330
8P2G|1|A|G|2331
8P2G|1|A|U|2332
8P2G|1|A|U|2333
8P2G|1|A|G|2334
8P2G|1|A|G|2335
8P2G|1|A|A|2336
8P2G|1|A|A|2337
8P2G|1|A|A|2338
8P2G|1|A|U|2339
8P2G|1|A|C|2340

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain J
50S ribosomal protein L5

Coloring options:


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