HL_8P2G_056

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGUUGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_056 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2234

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P2G|1|A|G|2330
8P2G|1|A|G|2331
8P2G|1|A|U|2332
8P2G|1|A|U|2333
8P2G|1|A|G|2334
8P2G|1|A|G|2335
8P2G|1|A|A|2336
8P2G|1|A|A|2337
8P2G|1|A|A|2338
8P2G|1|A|U|2339
8P2G|1|A|C|2340

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L5