HL_8P2G_081

3D structure

PDB id

8P2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.02 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

8P2G|1|a|G|274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2G_081 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1675

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P2G|1|a|G|267
8P2G|1|a|G|268
8P2G|1|a|U|269
8P2G|1|a|A|270
8P2G|1|a|A|271
8P2G|1|a|C|272
8P2G|1|a|G|273
8P2G|1|a|G|274
8P2G|1|a|C|275

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S17

Chain u

30S ribosomal protein S20