3D structure

PDB id
8P2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
AACUGAGACACGGU
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P2G_083 not in the Motif Atlas
Homologous match to HL_5J7L_008
Geometric discrepancy: 0.0681
The information below is about HL_5J7L_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81205.3
Basepair signature
cWW-cWW-tWH-F-tWH-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8P2G|1|a|A|328
8P2G|1|a|A|329
8P2G|1|a|C|330
8P2G|1|a|U|331
8P2G|1|a|G|332
8P2G|1|a|A|333
8P2G|1|a|G|334
8P2G|1|a|A|335
8P2G|1|a|C|336
8P2G|1|a|A|337
8P2G|1|a|C|338
8P2G|1|a|G|339
8P2G|1|a|G|340
8P2G|1|a|U|341

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain q
30S ribosomal protein S16
Chain u
30S ribosomal protein S20

Coloring options:


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