HL_8P2H_067

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8P2H|1|A|G|2778, 8P2H|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2H_067 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0779

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8P2H|1|A|C|2772
8P2H|1|A|U|2773
8P2H|1|A|G|2774
8P2H|1|A|A|2775
8P2H|1|A|A|2776
8P2H|1|A|A|2777
8P2H|1|A|G|2778
8P2H|1|A|C|2779
8P2H|1|A|A|2780
8P2H|1|A|U|2781
8P2H|1|A|C|2782
8P2H|1|A|U|2783
8P2H|1|A|A|2784
8P2H|1|A|A|2785
8P2H|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain K

50S ribosomal protein L6

Chain M

50S ribosomal protein L13