HL_8P2K_041

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCGGUG

Length

7 nucleotides

Bulged bases

8P2K|1|B5|G|134, 8P2K|1|B5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_041 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.1449

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8P2K|1|B5|C|131
8P2K|1|B5|G|132
8P2K|1|B5|C|133
8P2K|1|B5|G|134
8P2K|1|B5|G|135
8P2K|1|B5|U|136
8P2K|1|B5|G|137

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BN

Ribosomal protein L15

Chain Bh

60S ribosomal protein L35

Chain Bj

Ribosomal protein L37