HL_8P2K_050

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAGACCUG

Length

9 nucleotides

Bulged bases

8P2K|1|B5|C|867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_050 not in the Motif Atlas

Geometric match to HL_2OEU_002

Geometric discrepancy: 0.3591

The information below is about HL_2OEU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02817.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|C|862
8P2K|1|B5|G|863
8P2K|1|B5|A|864
8P2K|1|B5|G|865
8P2K|1|B5|A|866
8P2K|1|B5|C|867
8P2K|1|B5|C|868
8P2K|1|B5|U|869
8P2K|1|B5|G|870

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

60S ribosomal protein L6

Chain BF

Ribosomal Protein uL30