HL_8P2K_066

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8P2K|1|B5|A|1923

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_066 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.2642

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P2K|1|B5|C|1917
8P2K|1|B5|A|1918
8P2K|1|B5|U|1919
8P2K|1|B5|G|1920
8P2K|1|B5|G|1921
8P2K|1|B5|A|1922
8P2K|1|B5|A|1923
8P2K|1|B5|G|1924
8P2K|1|B5|U|1925
8P2K|1|B5|C|1926
8P2K|1|B5|G|1927

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12