HL_8P2K_100
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8P2K|1|B5|U|4100
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P2K_100 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.5009
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8P2K|1|B5|U|4098
8P2K|1|B5|PSU|4099
8P2K|1|B5|U|4100
8P2K|1|B5|G|4101
8P2K|1|B5|G|4102
8P2K|1|B5|G|4103
8P2K|1|B5|U|4104
8P2K|1|B5|U|4105
8P2K|1|B5|U|4106
8P2K|1|B5|PSU|4107
8P2K|1|B5|A|4108
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein L13
- Chain Ba
- 60S ribosomal protein L27a
- Chain Bi
- 60S ribosomal protein L36
- Chain Bo
- eL42
- Chain Bv
- Ribosomal protein uL1
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