HL_8P2K_101

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8P2K|1|B5|U|4165, 8P2K|1|B5|A|4168

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_101 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3548

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8P2K|1|B5|C|4163
8P2K|1|B5|G|4164
8P2K|1|B5|U|4165
8P2K|1|B5|PSU|4166
8P2K|1|B5|C|4167
8P2K|1|B5|A|4168
8P2K|1|B5|PSU|4169
8P2K|1|B5|A|4170
8P2K|1|B5|G|4171

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10

Chain Bm

Ubiquitin-60S ribosomal protein L40