HL_8P2K_102

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8P2K|1|B5|G|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_102 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.1091

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8P2K|1|B5|A|4220
8P2K|1|B5|G|4221
8P2K|1|B5|C|4222
8P2K|1|B5|A|4223
8P2K|1|B5|G|4224
8P2K|1|B5|A|4225
8P2K|1|B5|A|4226
8P2K|1|B5|U|4227

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain Bm

Ubiquitin-60S ribosomal protein L40