HL_8P2K_111

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUCUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_111 not in the Motif Atlas

Homologous match to HL_8C3A_073

Geometric discrepancy: 0.1436

The information below is about HL_8C3A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8P2K|1|B7|C|36
8P2K|1|B7|G|37
8P2K|1|B7|U|38
8P2K|1|B7|C|39
8P2K|1|B7|U|40
8P2K|1|B7|G|41

Current chains

Chain B7

5S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein

Chain BJ

60S ribosomal protein L11