HL_8P2K_114
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(PSU)GAAUU(OMG)CAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 8P2K|1|B8|C|81, 8P2K|1|B8|A|84, 8P2K|1|B8|U|86
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P2K_114 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5884
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8P2K|1|B8|G|68
8P2K|1|B8|PSU|69
8P2K|1|B8|G|70
8P2K|1|B8|A|71
8P2K|1|B8|A|72
8P2K|1|B8|U|73
8P2K|1|B8|U|74
8P2K|1|B8|OMG|75
8P2K|1|B8|C|76
8P2K|1|B8|A|77
8P2K|1|B8|G|78
8P2K|1|B8|G|79
8P2K|1|B8|A|80
8P2K|1|B8|C|81
8P2K|1|B8|A|82
8P2K|1|B8|C|83
8P2K|1|B8|A|84
8P2K|1|B8|U|85
8P2K|1|B8|U|86
8P2K|1|B8|G|87
8P2K|1|B8|A|88
8P2K|1|B8|U|89
8P2K|1|B8|C|90
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- Ribosomal protein L26
- Chain Bh
- 60S ribosomal protein L35
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39-like
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