HL_8P2K_118

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8P2K|1|A2|A|465

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_118 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1334

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8P2K|1|A2|OMC|463
8P2K|1|A2|C|464
8P2K|1|A2|A|465
8P2K|1|A2|A|466
8P2K|1|A2|G|467
8P2K|1|A2|G|468

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BV

Ribosomal protein L23