HL_8P2K_123

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8P2K|1|B5|C|1269

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P2K_123 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0792

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8P2K|1|B5|U|1261
8P2K|1|B5|C|1262
8P2K|1|B5|U|1263
8P2K|1|B5|U|1264
8P2K|1|B5|G|1265
8P2K|1|B5|1MA|1266
8P2K|1|B5|A|1267
8P2K|1|B5|A|1268
8P2K|1|B5|C|1269
8P2K|1|B5|A2M|1270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain Ba

60S ribosomal protein L27a

Chain Be

Ribosomal protein L32