HL_8P4V_014
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 8P4V|1|1|C|648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_014 not in the Motif Atlas
- Homologous match to HL_8P9A_126
- Geometric discrepancy: 0.0704
- The information below is about HL_8P9A_126
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
8P4V|1|1|U|640
8P4V|1|1|C|641
8P4V|1|1|U|642
8P4V|1|1|U|643
8P4V|1|1|G|644
8P4V|1|1|A|645
8P4V|1|1|A|646
8P4V|1|1|A|647
8P4V|1|1|C|648
8P4V|1|1|A|649
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AF
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L3
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