8P4V | Motifs

226 Hairpin loops
490 Internal loops
132 Junction loops

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
HL_8P4V_001	1/1/38:45	No text annotation	homologous HL_8P9A_113 HL_30068.2
HL_8P4V_002	1/1/69:74	No text annotation	homologous HL_8P9A_114 HL_53890.2
HL_8P4V_003	1/1/90:96	No text annotation	homologous HL_8C3A_003 NA
HL_8P4V_004	1/1/132:136	No text annotation	homologous HL_8C3A_004 NA
HL_8P4V_005	1/1/194:201	No text annotation	homologous HL_8P9A_117 HL_01609.3
HL_8P4V_006	1/1/208:212	No text annotation	geometric HL_8C3A_006 NA
HL_8P4V_007	1/1/216:224	No text annotation	homologous HL_8P9A_119 HL_27670.2
HL_8P4V_008	1/1/278:287	T-loop related	homologous HL_8P9A_120 HL_77436.5
HL_8P4V_009	1/1/303:312	No text annotation	homologous HL_8P9A_121 HL_77600.2
HL_8P4V_010	1/1/357:362	GNRA	homologous HL_8P9A_122 HL_37824.7
HL_8P4V_011	1/1/382:387	GNRA	homologous HL_8P9A_123 HL_37824.7
HL_8P4V_012	1/1/543:548	No text annotation	geometric HL_5TBW_012 NA
HL_8P4V_013	1/1/599:604	GNRA	homologous HL_8P9A_125 HL_37824.7
HL_8P4V_014	1/1/640:649	T-loop with 2 stacked bulged bases	homologous HL_8P9A_126 HL_28252.8
HL_8P4V_015	1/1/686:694	No text annotation	homologous HL_8P9A_127 HL_41464.2
HL_8P4V_016	1/1/707:712	GNRA	homologous HL_8P9A_128 HL_37824.7
HL_8P4V_017	1/1/732:737	GNRA	homologous HL_8P9A_129 HL_37824.7
HL_8P4V_018	1/1/763:768	No text annotation	homologous HL_8P9A_130 HL_86870.2
HL_8P4V_019	1/1/844:849	GNRA	homologous HL_8P9A_131 HL_37824.7
HL_8P4V_020	1/1/876:885	No text annotation	homologous HL_8P9A_132 HL_88205.2
HL_8P4V_021	1/1/910:918	No text annotation	homologous HL_8P9A_133 HL_87553.1
HL_8P4V_022	1/1/958:963	No text annotation	homologous HL_8P9A_134 HL_70782.2
HL_8P4V_221	1/1/1022:1030	No text annotation	geometric HL_9DE7_001 HL_77082.1
HL_8P4V_024	1/1/1076:1083	T-loop related	homologous HL_8P9A_136 HL_77436.5
HL_8P4V_025	1/1/1126:1132	GNRA	homologous HL_8P9A_137 HL_37824.7
HL_8P4V_026	1/1/1148:1155	No text annotation	homologous HL_8C3A_026 NA
HL_8P4V_027	1/1/1239:1249	No text annotation	geometric HL_5J7L_143 HL_75660.5
HL_8P4V_028	1/1/1347:1357	No text annotation	homologous HL_8P9A_141 HL_29762.1
HL_8P4V_029	1/1/1403:1408	GNRA	homologous HL_8P9A_142 HL_37824.7
HL_8P4V_030	1/1/1462:1470	T-loop with 2 stacked bulged bases	homologous HL_8P9A_143 HL_28252.8
HL_8P4V_031	1/1/1506:1512	No text annotation	homologous HL_8P9A_144 HL_57176.2
HL_8P4V_032	1/1/1544:1549	GNRA variation	homologous HL_8C3A_033 NA
HL_8P4V_033	1/1/1599:1608	No text annotation	homologous HL_8P9A_146 HL_81545.2
HL_8P4V_034	1/1/1634:1639	GNRA	homologous HL_8P9A_147 HL_37824.7
HL_8P4V_035	1/1/1680:1688	No text annotation	homologous HL_8P9A_148 HL_77082.1
HL_8P4V_036	1/1/1719:1725	No text annotation	homologous HL_8P9A_149 HL_25967.2
HL_8P4V_037	1/1/1759:1766	No text annotation	homologous HL_8P9A_150 HL_25967.2
HL_8P4V_038	1/1/1792:1796	Mini UNCG	homologous HL_8P9A_151 HL_48778.2
HL_8P4V_039	1/1/1844:1851	No text annotation	homologous HL_8P9A_152 HL_89567.2
HL_8P4V_040	1/1/1862:1868	GNRA	homologous HL_8P9A_153 HL_37824.7
HL_8P4V_041	1/1/1923:1928	UNCG	homologous HL_8P9A_154 HL_34617.5
HL_8P4V_042	1/1/2110:2114	No text annotation	homologous HL_8P9A_156 HL_55195.3
HL_8P4V_043	1/1/2135:2145	No text annotation	homologous HL_8P9A_157 HL_01962.2
HL_8P4V_044	1/1/2164:2170	GNRA	homologous HL_8P9A_158 HL_37824.7
HL_8P4V_045	1/1/2220:2225	GNRA	homologous HL_8P9A_159 HL_37824.7
HL_8P4V_046	1/1/2253:2263	No text annotation	homologous HL_8C3A_049 NA
HL_8P4V_047	1/1/2292:2300	No text annotation	homologous HL_8P9A_161 HL_20167.2
HL_8P4V_048	1/1/2369:2378	No text annotation	homologous HL_8P9A_162 HL_61996.2
HL_8P4V_049	1/1/2534:2545	No text annotation
HL_8P4V_050	1/1/2568:2573	No text annotation	geometric HL_5TBW_053 NA
HL_8P4V_051	1/1/2616:2624	No text annotation	homologous HL_8P9A_165 HL_85367.2
HL_8P4V_052	1/1/2633:2645	No text annotation	homologous HL_8P9A_166 HL_91939.2
HL_8P4V_053	1/1/2673:2681	No text annotation	homologous HL_8P9A_167 HL_50860.2
HL_8P4V_054	1/1/2693:2700	Pseudoknot geometry	homologous HL_8P9A_168 HL_93324.4
HL_8P4V_055	1/1/2724:2732	No text annotation	homologous HL_8P9A_169 HL_80599.2
HL_8P4V_056	1/1/2744:2749	GNRA	homologous HL_8P9A_170 HL_37824.7
HL_8P4V_057	1/1/2776:2784	Pseudoknot geometry	homologous HL_8P9A_171 HL_93324.4
HL_8P4V_058	1/1/2840:2848	No text annotation	homologous HL_8P9A_172 HL_32735.2
HL_8P4V_059	1/1/2897:2904	No text annotation	homologous HL_8C3A_063 NA
HL_8P4V_060	1/1/2920:2926	No text annotation	homologous HL_8P9A_174 HL_30068.2
HL_8P4V_061	1/1/2963:2968	GNRA	homologous HL_8P9A_175 HL_37824.7
HL_8P4V_062	1/1/3025:3030	GNRA	homologous HL_8P9A_176 HL_37824.7
HL_8P4V_063	1/1/3068:3073	No text annotation	homologous HL_8P9A_177 HL_65794.5
HL_8P4V_064	1/1/3110:3124	No text annotation	homologous HL_8C3A_068 NA
HL_8P4V_065	1/1/3194:3197	No text annotation	geometric HL_5TBW_068 NA
HL_8P4V_066	1/1/3240:3247	No text annotation	homologous HL_8P9A_180 HL_07886.3
HL_8P4V_067	1/1/3303:3311	No text annotation	homologous HL_8P9A_181 HL_64690.6
HL_8P4V_068	1/1/3350:3353	Mini UNCG	homologous HL_8P9A_182 HL_48778.2
HL_8P4V_069	1/3/32:45	No text annotation	geometric HL_5TBW_238 NA
HL_8P4V_070	1/3/36:41	No text annotation	homologous HL_8C3A_073 NA
HL_8P4V_071	1/3/88:93	GNRA	homologous HL_8P9A_185 HL_37824.7
HL_8P4V_072	1/4/47:56	No text annotation	homologous HL_8P9A_186 HL_93438.2
HL_8P4V_073	1/4/69:89	No text annotation	homologous HL_8P9A_187 HL_51921.1
HL_8P4V_074	1/4/108:114	No text annotation	homologous HL_8P9A_188 HL_53890.2
HL_8P4V_075	1/4/124:129	No text annotation	homologous HL_8CRE_077 HL_86883.1
HL_8P4V_076	1/A/7:17	No text annotation	homologous HL_8P9A_190 HL_89881.5
HL_8P4V_077	1/A/70:81	No text annotation	homologous HL_8P9A_191 HL_81312.1
HL_8P4V_078	1/A/154:160	GNRA related	homologous HL_8P9A_192 HL_37824.7
HL_8P4V_222	1/A/190:195	No text annotation	homologous HL_8P9A_193 HL_53890.2
HL_8P4V_080	1/A/243:250	T-loop with 1 bulged base	homologous HL_8C3A_197 NA
HL_8P4V_081	1/A/276:279	Mini UNCG	homologous HL_8P9A_196 HL_48778.2
HL_8P4V_082	1/A/330:338	GNRA related	homologous HL_8C3A_199 NA
HL_8P4V_083	1/A/368:373	No text annotation	homologous HL_8P9A_198 HL_93535.1
HL_8P4V_084	1/A/393:404	No text annotation	homologous HL_8P9A_199 HL_06226.4
HL_8P4V_085	1/A/414:419	UNCG	homologous HL_8P9A_200 HL_34617.5
HL_8P4V_086	1/A/450:456	No text annotation	homologous HL_8P9A_201 HL_48417.5
HL_8P4V_087	1/A/520:532	No text annotation	homologous HL_8P9A_203 HL_05304.3
HL_8P4V_088	1/A/569:574	No text annotation	homologous HL_8P9A_204 HL_93535.1
HL_8P4V_223	1/A/703:735	No text annotation
HL_8P4V_090	1/A/764:772	No text annotation	homologous HL_8P9A_206 HL_85367.2
HL_8P4V_091	1/A/777:783	No text annotation	homologous HL_8P9A_207 HL_48417.5
HL_8P4V_092	1/A/829:843	Pseudoknot geometry	geometric HL_4V88_205 NA
HL_8P4V_093	1/A/900:909	No text annotation	homologous HL_8C3A_211 NA
HL_8P4V_094	1/A/937:942	GNRA	homologous HL_8P9A_210 HL_37824.7
HL_8P4V_095	1/A/997:1007	No text annotation	homologous HL_8P9A_211 HL_75293.5
HL_8P4V_096	1/A/1055:1064	No text annotation
HL_8P4V_097	1/A/1084:1089	GNRA	homologous HL_8P9A_213 HL_37824.7
HL_8P4V_098	1/A/1121:1126	GNRA	homologous HL_8C3A_216 NA
HL_8P4V_099	1/A/1188:1197	No text annotation	homologous HL_8P9A_215 HL_50779.4
HL_8P4V_100	1/A/1238:1247	No text annotation	homologous HL_8P9A_216 HL_81538.2
HL_8P4V_101	1/A/1296:1301	GNRA	homologous HL_8C3A_219 NA
HL_8P4V_102	1/A/1309:1316	T-loop related	homologous HL_8P9A_218 HL_77436.5
HL_8P4V_103	1/A/1359:1364	No text annotation	homologous HL_8P9A_219 HL_38901.2
HL_8P4V_104	1/A/1396:1402	No text annotation	homologous HL_8P9A_220 HL_37369.2
HL_8P4V_105	1/A/1501:1506	GNRA	homologous HL_8C3A_223 NA
HL_8P4V_106	1/A/1550:1561	No text annotation	homologous HL_8P9A_222 HL_67079.1
HL_8P4V_107	1/A/1594:1602	No text annotation	homologous HL_8P9A_223 NA
HL_8P4V_108	1/A/1678:1723	No text annotation
HL_8P4V_109	1/A/1778:1783	GNRA variation	homologous HL_8P9A_225 HL_37824.7
HL_8P4V_110	1/AR/38:45	No text annotation	homologous HL_8P9A_113 HL_30068.2
HL_8P4V_111	1/AR/69:74	No text annotation	homologous HL_8P9A_114 HL_53890.2
HL_8P4V_112	1/AR/90:96	No text annotation	homologous HL_8P9A_115 HL_37369.2
HL_8P4V_113	1/AR/132:136	No text annotation	homologous HL_8P9A_116 HL_32346.4
HL_8P4V_114	1/AR/194:201	No text annotation	homologous HL_8P9A_117 HL_01609.3
HL_8P4V_115	1/AR/208:212	No text annotation	geometric HL_4V9F_011 HL_75660.5
HL_8P4V_116	1/AR/216:224	No text annotation	homologous HL_8P9A_119 HL_27670.2
HL_8P4V_117	1/AR/278:287	T-loop related	homologous HL_8P9A_120 HL_77436.5
HL_8P4V_118	1/AR/303:312	No text annotation	homologous HL_8P9A_121 HL_77600.2
HL_8P4V_119	1/AR/357:362	GNRA	homologous HL_8P9A_122 HL_37824.7
HL_8P4V_120	1/AR/382:387	GNRA	homologous HL_8P9A_123 HL_37824.7
HL_8P4V_224	1/AR/543:548	No text annotation	homologous HL_8P9A_231 HL_13189.1
HL_8P4V_122	1/AR/599:604	GNRA	homologous HL_8P9A_125 HL_37824.7
HL_8P4V_123	1/AR/640:649	T-loop with 2 stacked bulged bases	homologous HL_8P9A_126 HL_28252.8
HL_8P4V_124	1/AR/686:694	No text annotation	homologous HL_8P9A_127 HL_41464.2
HL_8P4V_125	1/AR/707:712	GNRA	homologous HL_8P9A_128 HL_37824.7
HL_8P4V_126	1/AR/732:737	GNRA	homologous HL_8P9A_129 HL_37824.7
HL_8P4V_127	1/AR/763:768	No text annotation	homologous HL_8P9A_130 HL_86870.2
HL_8P4V_128	1/AR/844:849	GNRA	homologous HL_8P9A_131 HL_37824.7
HL_8P4V_129	1/AR/876:885	No text annotation	homologous HL_8P9A_132 HL_88205.2
HL_8P4V_130	1/AR/910:918	No text annotation	homologous HL_8P9A_133 HL_87553.1
HL_8P4V_131	1/AR/958:963	No text annotation	homologous HL_8P9A_134 HL_70782.2
HL_8P4V_132	1/AR/1023:1029	GNRA	geometric HL_5FQ5_003 HL_37824.7
HL_8P4V_133	1/AR/1076:1083	T-loop related	homologous HL_8P9A_136 HL_77436.5
HL_8P4V_134	1/AR/1126:1132	GNRA	homologous HL_8P9A_137 HL_37824.7
HL_8P4V_135	1/AR/1148:1155	No text annotation	homologous HL_8P9A_138 HL_42998.2
HL_8P4V_136	1/AR/1239:1249	No text annotation	homologous HL_8P9A_139 HL_19210.3
HL_8P4V_137	1/AR/1267:1274	No text annotation	homologous HL_8P9A_140 HL_81538.2
HL_8P4V_138	1/AR/1347:1357	No text annotation	homologous HL_8P9A_141 HL_29762.1
HL_8P4V_139	1/AR/1403:1408	GNRA	homologous HL_8P9A_142 HL_37824.7
HL_8P4V_140	1/AR/1462:1470	T-loop with 2 stacked bulged bases	homologous HL_8P9A_143 HL_28252.8
HL_8P4V_141	1/AR/1506:1512	No text annotation	homologous HL_8P9A_144 HL_57176.2
HL_8P4V_142	1/AR/1544:1549	GNRA variation	homologous HL_8P9A_145 HL_37824.7
HL_8P4V_143	1/AR/1599:1608	No text annotation	homologous HL_8P9A_146 HL_81545.2
HL_8P4V_144	1/AR/1634:1639	GNRA	homologous HL_8P9A_147 HL_37824.7
HL_8P4V_145	1/AR/1680:1688	No text annotation	homologous HL_8P9A_148 HL_77082.1
HL_8P4V_146	1/AR/1719:1725	No text annotation	homologous HL_8P9A_149 HL_25967.2
HL_8P4V_147	1/AR/1759:1766	No text annotation	homologous HL_8P9A_150 HL_25967.2
HL_8P4V_148	1/AR/1792:1796	Mini UNCG	homologous HL_8P9A_151 HL_48778.2
HL_8P4V_149	1/AR/1844:1851	No text annotation	homologous HL_8P9A_152 HL_89567.2
HL_8P4V_150	1/AR/1862:1868	GNRA	homologous HL_8P9A_153 HL_37824.7
HL_8P4V_151	1/AR/1923:1928	UNCG	homologous HL_8P9A_154 HL_34617.5
HL_8P4V_152	1/AR/2110:2114	No text annotation	homologous HL_8P9A_156 HL_55195.3
HL_8P4V_153	1/AR/2135:2145	No text annotation	homologous HL_8P9A_157 HL_01962.2
HL_8P4V_154	1/AR/2164:2170	GNRA	homologous HL_8P9A_158 HL_37824.7
HL_8P4V_155	1/AR/2220:2225	GNRA	homologous HL_8P9A_159 HL_37824.7
HL_8P4V_156	1/AR/2252:2264	No text annotation	homologous HL_8P9A_160 HL_70658.1
HL_8P4V_157	1/AR/2292:2300	No text annotation	homologous HL_8P9A_161 HL_20167.2
HL_8P4V_158	1/AR/2369:2378	No text annotation	homologous HL_8P9A_162 HL_61996.2
HL_8P4V_225	1/AR/2534:2545	No text annotation	homologous HL_8P9A_163 HL_23509.1
HL_8P4V_160	1/AR/2567:2574	No text annotation	homologous HL_8C3A_054 NA
HL_8P4V_161	1/AR/2616:2624	No text annotation	homologous HL_8P9A_165 HL_85367.2
HL_8P4V_162	1/AR/2633:2645	No text annotation	homologous HL_8P9A_166 HL_91939.2
HL_8P4V_163	1/AR/2673:2681	No text annotation	homologous HL_8P9A_167 HL_50860.2
HL_8P4V_164	1/AR/2693:2700	Pseudoknot geometry	homologous HL_8P9A_168 HL_93324.4
HL_8P4V_165	1/AR/2724:2732	No text annotation	homologous HL_8P9A_169 HL_80599.2
HL_8P4V_166	1/AR/2744:2749	GNRA	homologous HL_8P9A_170 HL_37824.7
HL_8P4V_167	1/AR/2776:2784	Pseudoknot geometry	homologous HL_8P9A_171 HL_93324.4
HL_8P4V_168	1/AR/2840:2848	No text annotation	homologous HL_8P9A_172 HL_32735.2
HL_8P4V_169	1/AR/2897:2904	No text annotation	homologous HL_8P9A_173 HL_31585.4
HL_8P4V_170	1/AR/2920:2926	No text annotation	homologous HL_8P9A_174 HL_30068.2
HL_8P4V_171	1/AR/2963:2968	GNRA	homologous HL_8P9A_175 HL_37824.7
HL_8P4V_172	1/AR/3025:3030	GNRA	homologous HL_8P9A_176 HL_37824.7
HL_8P4V_173	1/AR/3068:3073	No text annotation	homologous HL_8P9A_177 HL_65794.5
HL_8P4V_174	1/AR/3110:3124	No text annotation	homologous HL_8P9A_178 HL_74055.2
HL_8P4V_175	1/AR/3193:3199	No text annotation	homologous HL_8P9A_179 HL_08100.1
HL_8P4V_176	1/AR/3240:3247	No text annotation	homologous HL_8P9A_180 HL_07886.3
HL_8P4V_177	1/AR/3303:3311	No text annotation	homologous HL_8P9A_181 HL_64690.6
HL_8P4V_178	1/AR/3350:3353	Mini UNCG	homologous HL_8P9A_182 HL_48778.2
HL_8P4V_179	1/AS/32:45	No text annotation	geometric HL_5TBW_238 NA
HL_8P4V_180	1/AS/36:41	No text annotation	homologous HL_8P9A_184 HL_47787.2
HL_8P4V_181	1/AS/88:93	GNRA	homologous HL_8P9A_185 HL_37824.7
HL_8P4V_182	1/AT/47:56	No text annotation	homologous HL_8P4V_072 NA
HL_8P4V_183	1/AT/69:89	No text annotation	homologous HL_8P9A_187 HL_51921.1
HL_8P4V_184	1/AT/108:114	No text annotation	homologous HL_8P9A_188 HL_53890.2
HL_8P4V_185	1/AT/124:129	No text annotation	homologous HL_8P9A_189 HL_86883.1
HL_8P4V_186	1/sR/7:17	No text annotation	homologous HL_8P9A_190 HL_89881.5
HL_8P4V_187	1/sR/70:81	No text annotation	homologous HL_8P9A_191 HL_81312.1
HL_8P4V_188	1/sR/154:160	GNRA related	homologous HL_8P9A_192 HL_37824.7
HL_8P4V_189	1/sR/190:195	No text annotation	homologous HL_8P9A_193 HL_53890.2
HL_8P4V_190	1/sR/243:250	T-loop with 1 bulged base	homologous HL_8P9A_195 HL_77436.5
HL_8P4V_191	1/sR/276:279	Mini UNCG	homologous HL_8P9A_196 HL_48778.2
HL_8P4V_192	1/sR/330:338	No text annotation	homologous HL_8P9A_197 HL_84299.4
HL_8P4V_193	1/sR/368:373	No text annotation	homologous HL_8P9A_198 HL_93535.1
HL_8P4V_194	1/sR/393:404	No text annotation	homologous HL_8P9A_199 HL_06226.4
HL_8P4V_195	1/sR/414:419	UNCG	homologous HL_8P9A_200 HL_34617.5
HL_8P4V_196	1/sR/450:456	No text annotation	homologous HL_8P9A_201 HL_48417.5
HL_8P4V_197	1/sR/483:504	No text annotation	homologous HL_8P9A_202 NA
HL_8P4V_198	1/sR/520:532	No text annotation	homologous HL_8P9A_203 HL_05304.3
HL_8P4V_199	1/sR/569:574	No text annotation	homologous HL_8P9A_204 HL_93535.1
HL_8P4V_200	1/sR/709:729	No text annotation
HL_8P4V_201	1/sR/764:772	No text annotation	homologous HL_8P9A_206 HL_85367.2
HL_8P4V_202	1/sR/777:783	No text annotation	homologous HL_8P9A_207 HL_48417.5
HL_8P4V_226	1/sR/829:843	No text annotation	homologous HL_8P9A_236 HL_88364.2
HL_8P4V_204	1/sR/900:909	No text annotation	homologous HL_8P9A_209 HL_75293.5
HL_8P4V_205	1/sR/937:942	GNRA	homologous HL_8P9A_210 HL_37824.7
HL_8P4V_206	1/sR/997:1007	No text annotation	homologous HL_8P9A_211 HL_75293.5
HL_8P4V_207	1/sR/1055:1064	No text annotation	homologous HL_8P9A_212 HL_97917.2
HL_8P4V_208	1/sR/1084:1089	GNRA	homologous HL_8P9A_213 HL_37824.7
HL_8P4V_209	1/sR/1121:1126	GNRA	homologous HL_8P9A_214 HL_37824.7
HL_8P4V_210	1/sR/1188:1197	No text annotation	homologous HL_8P9A_215 HL_50779.4
HL_8P4V_211	1/sR/1238:1247	No text annotation	homologous HL_8P9A_216 HL_81538.2
HL_8P4V_212	1/sR/1296:1301	GNRA	homologous HL_8P9A_217 HL_37824.7
HL_8P4V_213	1/sR/1309:1316	T-loop related	homologous HL_8P9A_218 HL_77436.5
HL_8P4V_214	1/sR/1359:1364	No text annotation	homologous HL_8P9A_219 HL_38901.2
HL_8P4V_215	1/sR/1396:1402	No text annotation	homologous HL_8P9A_220 HL_37369.2
HL_8P4V_216	1/sR/1501:1506	GNRA	homologous HL_8P9A_221 HL_37824.7
HL_8P4V_217	1/sR/1550:1561	No text annotation	homologous HL_8P9A_222 HL_67079.1
HL_8P4V_218	1/sR/1594:1602	No text annotation	homologous HL_8P9A_223 NA
HL_8P4V_219	1/sR/1691:1710	No text annotation	homologous HL_8P9A_224 HL_89346.1
HL_8P4V_220	1/sR/1778:1783	GNRA variation	homologous HL_8P9A_225 HL_37824.7

Problematic loops

loop id	Problem	Sequence
HL_8P4V_023	Deprecated	No text annotation
HL_8P4V_079	Deprecated	No text annotation
HL_8P4V_089	Deprecated	No text annotation
HL_8P4V_121	Deprecated	No text annotation
HL_8P4V_159	Deprecated	No text annotation
HL_8P4V_203	Deprecated	No text annotation

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
IL_8P4V_001	1/1/7:8, 1/4/150:152	Single bulged C	homologous IL_8C3A_002 NA
IL_8P4V_002	1/1/13:15, 1/4/144:145	Single bulged U	homologous IL_8C3A_003 NA
IL_8P4V_003	1/1/27:28, 1/1/56:58	No text annotation	homologous IL_8C3A_004 NA
IL_8P4V_004	1/1/31:38, 1/1/45:53	tSH-tHW-tHH-tHS	homologous IL_8P9A_234 IL_84694.2
IL_8P4V_005	1/1/82:89, 1/1/97:103	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_235 IL_65594.1
IL_8P4V_006	1/1/123:124, 1/1/144:149	No text annotation	homologous IL_8C3A_007 NA
IL_8P4V_007	1/1/125:127, 1/1/141:143	Isolated non-canonical cWW pair	homologous IL_8C3A_008 NA
IL_8P4V_008	1/1/163:165, 1/1/257:258	Single stack bend	homologous IL_8P9A_238 IL_90729.1
IL_8P4V_009	1/1/169:170, 1/1/248:253	No text annotation	geometric IL_5TBW_010 NA
IL_8P4V_464	1/1/177:178, 1/1/238:241	No text annotation
IL_8P4V_011	1/1/189:191, 1/1/204:205	Single bulged U	homologous IL_8P9A_241 IL_89505.4
IL_8P4V_012	1/1/337:339, 1/4/25:26	Single bulged A	homologous IL_8P9A_242 IL_31462.6
IL_8P4V_013	1/1/376:379, 1/1/390:403	No text annotation	geometric IL_5TBW_014 NA
IL_8P4V_014	1/1/404:410, 1/4/13:19	No text annotation	homologous IL_8P9A_244 IL_04021.2
IL_8P4V_015	1/1/429:431, 1/1/628:630	Isolated non-canonical cWW pair	homologous IL_8P9A_245 IL_07785.1
IL_8P4V_016	1/1/512:513, 1/1/577:579	Single bulged A	homologous IL_8P9A_246 IL_31462.6
IL_8P4V_017	1/1/517:525, 1/1/567:573	No text annotation	homologous IL_8P9A_247 IL_58126.1
IL_8P4V_018	1/1/531:538, 1/1/553:561	No text annotation	homologous IL_8P9A_248 IL_43858.1
IL_8P4V_019	1/1/668:670, 1/1/792:794	Isolated non-canonical cWW pair	homologous IL_8C3A_023 NA
IL_8P4V_020	1/1/680:684, 1/1/696:700	No text annotation	homologous IL_8P9A_250 IL_74367.1
IL_8P4V_021	1/1/725:728, 1/1/741:745	No text annotation	homologous IL_8P9A_251 IL_23774.1
IL_8P4V_022	1/1/752:753, 1/1/779:781	Single bulged A	homologous IL_8C3A_026 NA
IL_8P4V_023	1/1/755:756, 1/1/775:777	Single bulged U	homologous IL_8P9A_253 IL_89505.4
IL_8P4V_024	1/1/758:763, 1/1/768:773	No text annotation	homologous IL_8P9A_254 IL_85536.2
IL_8P4V_025	1/1/803:805, 1/1/938:940	Isolated non-canonical cWW pair	homologous IL_8P9A_255 IL_87907.2
IL_8P4V_026	1/1/805:809, 1/1/931:938	No text annotation	homologous IL_8P9A_256 IL_54041.2
IL_8P4V_027	1/1/833:834, 1/1/859:861	Single bulged G	homologous IL_8P9A_257 IL_00225.13
IL_8P4V_028	1/1/834:838, 1/1/855:859	Triple sheared	homologous IL_8P9A_258 IL_50730.2
IL_8P4V_029	1/1/869:872, 1/1/888:890	No text annotation	homologous IL_8P9A_259 IL_51387.2
IL_8P4V_030	1/1/873:875, 1/1/886:887	Single bulged U	homologous IL_8P9A_260 IL_89505.4
IL_8P4V_031	1/1/907:909, 1/1/919:923	No text annotation	homologous IL_8P9A_261 IL_06549.2
IL_8P4V_032	1/1/954:956, 1/1/965:967	Isolated non-canonical cWW pair	homologous IL_8P9A_262 IL_28037.2
IL_8P4V_033	1/1/969:970, 1/1/1111:1113	Single stack bend	homologous IL_8P9A_263 IL_26793.1
IL_8P4V_034	1/1/977:981, 1/1/1102:1104	No text annotation	homologous IL_8P9A_264 IL_25463.1
IL_8P4V_035	1/1/983:985, 1/1/1099:1100	Single bulged G	homologous IL_8P9A_265 IL_00225.13
IL_8P4V_036	1/1/991:997, 1/1/1052:1058	7x7 Sarcin-Ricin with intercalated A; G-bulge	homologous IL_8P9A_266 IL_29198.2
IL_8P4V_037	1/1/997:998, 1/1/1050:1052	Minor groove platform	homologous IL_8P9A_267 IL_51454.3
IL_8P4V_038	1/1/999:1004, 1/1/1046:1049	C-loop with bulged stacked A's	homologous IL_8C3A_043 NA
IL_8P4V_039	1/1/1006:1009, 1/1/1041:1044	No text annotation	homologous IL_8P9A_269 IL_77658.1
IL_8P4V_040	1/1/1009:1011, 1/1/1039:1041	Isolated non-canonical cWW pair	homologous IL_8P9A_270 IL_87907.2
IL_8P4V_041	1/1/1014:1018, 1/1/1034:1036	No text annotation	homologous IL_8P9A_271 IL_11415.1
IL_8P4V_042	1/1/1069:1072, 1/1/1086:1089	Tandem non-canonical cWW pairs	geometric IL_3WBM_002 IL_85033.2
IL_8P4V_043	1/1/1074:1076, 1/1/1083:1084	Single bulged A	homologous IL_8P9A_273 IL_31462.6
IL_8P4V_044	1/1/1120:1122, 1/1/1136:1138	Isolated non-canonical cWW pair	homologous IL_8P9A_274 IL_87907.2
IL_8P4V_046	1/1/1167:1171, 1/1/1328:1332	UAA/GAN	homologous IL_8P9A_276 IL_38507.2
IL_8P4V_047	1/1/1173:1180, 1/1/1325:1326	SSU/LSU pseudoknot	homologous IL_8P9A_277 IL_41203.4
IL_8P4V_048	1/1/1180:1182, 1/1/1324:1325	Single bulged U	homologous IL_8P9A_278 IL_89505.4
IL_8P4V_049	1/1/1187:1194, 1/1/1314:1319	No text annotation	homologous IL_8P9A_279 IL_77278.1
IL_8P4V_050	1/1/1194:1205, 1/1/1299:1314	No text annotation	homologous IL_8P9A_280 IL_83149.1
IL_8P4V_051	1/1/1207:1209, 1/1/1296:1297	Single bulged U	homologous IL_8P9A_281 IL_89505.4
IL_8P4V_465	1/1/1218:1226, 1/1/1283:1287	Kink-turn	homologous IL_8P9A_282 IL_99692.2
IL_8P4V_053	1/1/1230:1234, 1/1/1254:1279	No text annotation
IL_8P4V_054	1/1/1230:1238, 1/1/1250:1279	No text annotation
IL_8P4V_055	1/1/1234:1238, 1/1/1250:1254	No text annotation	homologous IL_8P9A_283 IL_16218.2
IL_8P4V_056	1/1/1376:1378, 1/1/1428:1431	No text annotation	homologous IL_8P9A_285 IL_42997.3
IL_8P4V_057	1/1/1385:1387, 1/1/1420:1421	Single bulged A	homologous IL_8P9A_286 IL_31462.6
IL_8P4V_058	1/1/1388:1395, 1/1/1415:1419	Kink-turn	homologous IL_8P9A_287 IL_70923.9
IL_8P4V_059	1/1/1398:1400, 1/1/1411:1412	Single bulged A	homologous IL_8P9A_288 IL_31462.6
IL_8P4V_060	1/1/1444:1450, 1/1/2354:2359	7x6 Sarcin-Ricin; G-bulge	homologous IL_8P9A_289 IL_26307.2
IL_8P4V_061	1/1/1501:1505, 1/1/1513:1515	C-loop	homologous IL_8P9A_290 IL_63596.11
IL_8P4V_062	1/1/1532:1536, 1/1/1585:1590	UAA/GAN	homologous IL_8P9A_291 IL_38507.2
IL_8P4V_063	1/1/1537:1542, 1/1/1551:1584	No text annotation
IL_8P4V_064	1/1/1618:1621, 1/1/1824:1826	No text annotation	homologous IL_8P9A_292 IL_15698.3
IL_8P4V_466	1/1/1623:1624, 1/1/1819:1822	Major groove platform related	homologous IL_8P9A_293 IL_48076.6
IL_8P4V_066	1/1/1627:1631, 1/1/1811:1816	No text annotation	homologous IL_8C3A_072 NA
IL_8P4V_067	1/1/1645:1649, 1/1/1806:1810	Triple sheared	homologous IL_8P9A_295 IL_50730.2
IL_8P4V_068	1/1/1661:1663, 1/1/1786:1788	Isolated non-canonical cWW pair	homologous IL_8P9A_296 IL_87907.2
IL_8P4V_069	1/1/1669:1670, 1/1/1778:1780	Single bulged C	homologous IL_8P9A_297 IL_61258.15
IL_8P4V_070	1/1/1670:1671, 1/1/1776:1778	Single stack bend	homologous IL_8C3A_076 NA
IL_8P4V_071	1/1/1694:1698, 1/1/1747:1752	No text annotation	homologous IL_8P9A_299 IL_00981.1
IL_8P4V_072	1/1/1702:1707, 1/1/1737:1743	No text annotation	homologous IL_8P9A_300 IL_23038.1
IL_8P4V_073	1/1/1711:1717, 1/1/1727:1733	No text annotation	homologous IL_8P9A_301 IL_69543.3
IL_8P4V_074	1/1/1883:1889, 1/1/2346:2349	No text annotation	homologous IL_8P9A_302 IL_22829.2
IL_8P4V_075	1/1/1895:1897, 1/1/2338:2340	No text annotation	homologous IL_8P9A_303 IL_67095.2
IL_8P4V_076	1/1/1898:1901, 1/1/2336:2337	Major groove platform; stack outside cWW	geometric IL_5TBW_076 NA
IL_8P4V_077	1/1/1898:1906, 1/1/2333:2337	No text annotation	geometric IL_5TBW_474 NA
IL_8P4V_078	1/1/1901:1906, 1/1/2333:2336	No text annotation	homologous IL_8P9A_306 IL_76758.2
IL_8P4V_079	1/1/1918:1923, 1/1/1928:1934	No text annotation	homologous IL_8P9A_307 IL_47346.2
IL_8P4V_080	1/1/1940:1942, 1/1/2106:2108	Isolated non-canonical cWW pair	homologous IL_8P9A_308 IL_87907.2
IL_8P4V_467	1/1/1947:1948, 1/1/2098:2101	No text annotation	homologous IL_8P9A_309 IL_73355.1
IL_8P4V_082	1/1/1949:1953, 1/1/2094:2097	No text annotation
IL_8P4V_083	1/1/2128:2129, 1/1/2323:2325	Single bulged A	homologous IL_8C3A_087 NA
IL_8P4V_084	1/1/2156:2161, 1/1/2173:2180	No text annotation	homologous IL_8C3A_088 NA
IL_8P4V_085	1/1/2196:2199, 1/1/2245:2246	Minor groove platform, major groove intercalation	homologous IL_8P9A_312 IL_95583.2
IL_8P4V_086	1/1/2200:2201, 1/1/2241:2244	Major groove intercalation	homologous IL_8P9A_313 IL_82107.4
IL_8P4V_087	1/1/2204:2206, 1/1/2237:2238	Single bulged U	homologous IL_8P9A_314 IL_89505.4
IL_8P4V_088	1/1/2206:2210, 1/1/2235:2237	No text annotation	homologous IL_8P9A_315 IL_36516.3
IL_8P4V_089	1/1/2211:2217, 1/1/2228:2234	No text annotation	homologous IL_8P9A_316 IL_88116.2
IL_8P4V_090	1/1/2276:2277, 1/1/2307:2310	Bulged stacked bases	geometric IL_5TBW_089 NA
IL_8P4V_091	1/1/2277:2288, 1/1/2304:2307	No text annotation	homologous IL_8P9A_318 IL_42218.2
IL_8P4V_092	1/1/2391:2394, 1/1/2986:2988	No text annotation	homologous IL_8P9A_319 IL_55516.2
IL_8P4V_093	1/1/2396:2398, 1/1/2981:2984	No text annotation	homologous IL_8P9A_320 IL_83389.2
IL_8P4V_094	1/1/2409:2411, 1/1/2811:2812	Single bulged U	homologous IL_8P9A_321 IL_89505.4
IL_8P4V_095	1/1/2412:2413, 1/1/2807:2810	Minor groove platform	homologous IL_8P9A_322 IL_51454.3
IL_8P4V_096	1/1/2423:2425, 1/1/2604:2607	No text annotation	homologous IL_8P9A_323 IL_85599.2
IL_8P4V_097	1/1/2520:2526, 1/1/2584:2587	No text annotation	homologous IL_8C3A_106 NA
IL_8P4V_098	1/1/2614:2615, 1/1/2625:2627	Single bulged A	homologous IL_8P9A_325 IL_31462.6
IL_8P4V_099	1/1/2666:2668, 1/1/2686:2690	No text annotation	homologous IL_8P9A_326 IL_61476.2
IL_8P4V_100	1/1/2718:2721, 1/1/2735:2738	No text annotation	homologous IL_8P9A_327 IL_85033.2
IL_8P4V_101	1/1/2770:2773, 1/1/2787:2788	Single stack bend with bulge	homologous IL_8P9A_328 IL_90729.1
IL_8P4V_102	1/1/2823:2824, 1/1/2865:2867	Major groove platform	homologous IL_8P9A_329 IL_48076.6
IL_8P4V_103	1/1/2824:2826, 1/1/2863:2865	Isolated non-canonical cWW pair	homologous IL_8P9A_330 IL_87907.2
IL_8P4V_104	1/1/2826:2828, 1/1/2862:2863	No text annotation	homologous IL_8P9A_331 IL_07039.3
IL_8P4V_105	1/1/2828:2830, 1/1/2858:2862	No text annotation	homologous IL_8P9A_332 IL_51387.2
IL_8P4V_106	1/1/2835:2839, 1/1/2849:2853	No text annotation	homologous IL_8P9A_333 IL_17948.2
IL_8P4V_107	1/1/2876:2877, 1/1/2949:2951	Major groove platform	homologous IL_8C3A_115 NA
IL_8P4V_108	1/1/2879:2881, 1/1/2943:2947	No text annotation	homologous IL_8P9A_335 IL_07785.1
IL_8P4V_109	1/1/2881:2882, 1/1/2940:2943	No text annotation	homologous IL_8C3A_117 NA
IL_8P4V_110	1/1/2889:2891, 1/1/2912:2914	Isolated non-canonical cWW pair	geometric IL_5TBW_110 NA
IL_8P4V_111	1/1/2889:2892, 1/1/2909:2914	No text annotation	geometric IL_5TBW_475 NA
IL_8P4V_112	1/1/2891:2892, 1/1/2909:2912	No text annotation	homologous IL_8P9A_339 IL_02555.1
IL_8P4V_113	1/1/2918:2920, 1/1/2926:2928	Isolated non-canonical cWW pair	homologous IL_8P9A_340 IL_87907.2
IL_8P4V_114	1/1/2960:2961, 1/1/2970:2972	Single bulged A	geometric IL_7A0S_002 IL_31462.6
IL_8P4V_115	1/1/3004:3007, 1/1/3139:3144	Double sheared	homologous IL_8P9A_342 IL_09705.15
IL_8P4V_116	1/1/3012:3014, 1/1/3040:3042	Isolated non-canonical cWW pair	homologous IL_8C3A_124 NA
IL_8P4V_117	1/1/3018:3025, 1/1/3030:3036	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_344 IL_04346.10
IL_8P4V_118	1/1/3047:3051, 1/1/3091:3094	No text annotation	homologous IL_8P9A_345 IL_83150.2
IL_8P4V_119	1/1/3054:3059, 1/1/3084:3088	No text annotation	homologous IL_8P9A_346 IL_21001.1
IL_8P4V_120	1/1/3063:3064, 1/1/3077:3080	No text annotation	homologous IL_8P9A_347 NA
IL_8P4V_121	1/1/3103:3107, 1/1/3127:3131	UAA/GAN	homologous IL_8P9A_348 IL_38507.2
IL_8P4V_122	1/1/3163:3166, 1/1/3284:3287	No text annotation	geometric IL_5TBW_504 NA
IL_8P4V_123	1/1/3168:3170, 1/1/3280:3282	Isolated non-canonical cWW pair	homologous IL_8P9A_350 IL_28037.2
IL_8P4V_124	1/1/3177:3179, 1/1/3210:3211	Single bulged A	homologous IL_8P9A_351 IL_31462.6
IL_8P4V_125	1/1/3179:3188, 1/1/3204:3210	No text annotation	homologous IL_8P9A_352 IL_42231.1
IL_8P4V_126	1/1/3193:3194, 1/1/3197:3199	Single bulged U	geometric IL_5TBW_125 NA
IL_8P4V_127	1/1/3225:3229, 1/1/3258:3260	No text annotation	homologous IL_8P9A_353 IL_82741.2
IL_8P4V_128	1/1/3233:3235, 1/1/3252:3254	Isolated non-canonical cWW pair	homologous IL_8P9A_354 IL_87907.2
IL_8P4V_129	1/1/3235:3238, 1/1/3249:3252	No text annotation	homologous IL_8P9A_355 IL_77658.1
IL_8P4V_130	1/1/3300:3303, 1/1/3311:3314	No text annotation	homologous IL_8P9A_356 IL_77658.1
IL_8P4V_131	1/1/3324:3325, 1/1/3381:3383	Single bulged U	homologous IL_8C3A_137 NA
IL_8P4V_132	1/1/3328:3330, 1/1/3373:3378	No text annotation	homologous IL_8P9A_359 IL_43622.1
IL_8P4V_133	1/1/3332:3337, 1/1/3367:3371	No text annotation	homologous IL_8P9A_360 IL_70411.2
IL_8P4V_134	1/1/3340:3342, 1/1/3363:3364	Single bulged U	homologous IL_8C3A_140 NA
IL_8P4V_135	1/1/3342:3345, 1/1/3360:3363	Double sheared; A in syn	homologous IL_8P9A_362 IL_09705.15
IL_8P4V_136	1/1/3347:3350, 1/1/3353:3358	Tandem non-canonical cWW pairs	geometric IL_3WBM_003 IL_85033.2
IL_8P4V_137	1/3/15:16, 1/3/63:65	Single bulged A	homologous IL_8P9A_364 IL_31462.6
IL_8P4V_138	1/3/21:27, 1/3/53:58	No text annotation	homologous IL_8P9A_365 IL_18487.1
IL_8P4V_468	1/3/28:29, 1/3/49:52	No text annotation	homologous IL_8P9A_366 IL_15052.4
IL_8P4V_140	1/3/29:30, 1/3/47:49	Single stack bend	homologous IL_8P9A_367 IL_90729.1
IL_8P4V_141	1/3/32:36, 1/3/41:45	No text annotation	homologous IL_8C3A_147 NA
IL_8P4V_142	1/3/72:80, 1/3/100:106	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_369 IL_04346.10
IL_8P4V_143	1/3/84:87, 1/3/94:96	Isolated non-canonical cWW pair	homologous IL_8P9A_370 IL_87907.2
IL_8P4V_144	1/4/64:66, 1/4/93:96	No text annotation	homologous IL_8CRE_150 IL_07785.1
IL_8P4V_145	1/4/68:69, 1/4/89:91	Single bulged U
IL_8P4V_146	1/A/24:26, 1/A/600:601	Single bulged C	homologous IL_8P9A_373 IL_61258.15
IL_8P4V_147	1/A/35:37, 1/A/471:473	Isolated non-canonical cWW pair	homologous IL_8P9A_374 IL_87907.2
IL_8P4V_148	1/A/37:41, 1/A/466:471	No text annotation	homologous IL_8P9A_375 IL_12697.1
IL_8P4V_149	1/A/42:48, 1/A/431:433	No text annotation	geometric IL_4V88_387 NA
IL_8P4V_150	1/A/50:52, 1/A/428:429	Minor groove platform	homologous IL_8P9A_377 IL_51454.3
IL_8P4V_151	1/A/58:63, 1/A/87:89	No text annotation	homologous IL_8P9A_378 IL_61299.4
IL_8P4V_469	1/A/64:69, 1/A/82:86	No text annotation	homologous IL_8P9A_379 IL_21667.1
IL_8P4V_153	1/A/109:112, 1/A/302:305	No text annotation	homologous IL_8P9A_380 IL_77658.1
IL_8P4V_154	1/A/113:116, 1/A/300:301	Multiple bulged bases	homologous IL_8C3A_400 NA
IL_8P4V_155	1/A/117:122, 1/A/295:299	No text annotation	homologous IL_8P9A_382 IL_29223.1
IL_8P4V_156	1/A/143:149, 1/A/165:172	No text annotation	homologous IL_8P9A_383 IL_80604.6
IL_8P4V_157	1/A/150:152, 1/A/162:164	No text annotation	homologous IL_8P9A_384 IL_44465.1
IL_8P4V_470	1/A/186:189, 1/A/196:199	Double sheared	homologous IL_8P9A_385 IL_09705.15
IL_8P4V_159	1/A/204:206, 1/A/259:263	No text annotation	homologous IL_8P9A_386 IL_51387.2
IL_8P4V_160	1/A/206:208, 1/A/257:259	Isolated non-canonical cWW pair	homologous IL_8P9A_387 IL_28037.2
IL_8P4V_161	1/A/213:243, 1/A/250:252	No text annotation
IL_8P4V_162	1/A/265:267, 1/A/288:289	Single bulged A	homologous IL_8P9A_388 IL_31462.6
IL_8P4V_163	1/A/270:273, 1/A/283:285	No text annotation	homologous IL_8P9A_389 IL_15698.3
IL_8P4V_164	1/A/274:276, 1/A/279:282	Isolated non-canonical cWW pair	geometric IL_7ECK_015 IL_87907.2
IL_8P4V_165	1/A/311:316, 1/A/348:355	Kink-turn with non-sequential stacking	homologous IL_8P9A_391 IL_46174.3
IL_8P4V_166	1/A/318:323, 1/A/345:346	No text annotation	homologous IL_8P9A_392 IL_47074.2
IL_8P4V_167	1/A/363:365, 1/A/376:381	No text annotation	homologous IL_8C3A_412 NA
IL_8P4V_168	1/A/389:391, 1/A/406:408	Isolated cWH basepair	homologous IL_8P9A_394 IL_10167.6
IL_8P4V_169	1/A/411:413, 1/A/420:422	Isolated non-canonical cWW pair	homologous IL_8C3A_414 NA
IL_8P4V_170	1/A/439:441, 1/A/463:464	Single bulged U	homologous IL_8P9A_396 IL_89505.4
IL_8P4V_471	1/A/443:447, 1/A/460:461	No text annotation	homologous IL_8P9A_397 IL_03109.3
IL_8P4V_472	1/A/447:448, 1/A/458:460	Single bulged G	homologous IL_8P9A_398 IL_00225.13
IL_8P4V_172	1/A/517:520, 1/A/532:535	Double sheared	geometric IL_4LFB_060 IL_09705.15
IL_8P4V_173	1/A/550:557, 1/A/587:588	SSU/LSU pseudoknot	homologous IL_8P9A_402 IL_41203.4
IL_8P4V_174	1/A/557:559, 1/A/586:587	Single bulged U	homologous IL_8C3A_424 NA
IL_8P4V_175	1/A/562:568, 1/A/575:583	No text annotation	homologous IL_8P9A_404 IL_54177.4
IL_8P4V_176	1/A/616:622, 1/A/1104:1105	No text annotation	homologous IL_8P9A_405 IL_38186.6
IL_8P4V_177	1/A/624:626, 1/A/973:975	Isolated non-canonical cWW pair	homologous IL_8P9A_406 IL_87907.2
IL_8P4V_178	1/A/627:631, 1/A/968:972	tSH-tHW-tHS	homologous IL_8C3A_428 NA
IL_8P4V_179	1/A/646:648, 1/A/686:688	No text annotation	homologous IL_8P9A_408 IL_44465.1
IL_8P4V_180	1/A/746:747, 1/A/802:805	Major groove minor groove platform; mini C-loop	homologous IL_8C3A_430 NA
IL_8P4V_181	1/A/748:750, 1/A/799:801	Isolated non-canonical cWW pair	homologous IL_8P9A_413 IL_28037.2
IL_8P4V_473	1/A/751:759, 1/A/791:798	No text annotation	homologous IL_8P9A_414 IL_59049.1
IL_8P4V_183	1/A/817:822, 1/A/850:854	No text annotation	homologous IL_8P9A_416 NA
IL_8P4V_185	1/A/865:866, 1/A/962:965	Major groove platform; stack outside cWW	geometric IL_4V88_428 NA
IL_8P4V_186	1/A/868:870, 1/A/957:960	Isolated non-canonical cWW pair	homologous IL_8P9A_418 IL_57744.1
IL_8P4V_187	1/A/871:873, 1/A/954:956	Isolated non-canonical cWW pair	geometric IL_2R8S_001 IL_87907.2
IL_8P4V_188	1/A/874:878, 1/A/950:953	No text annotation	homologous IL_8P9A_420 IL_85033.2
IL_8P4V_189	1/A/885:888, 1/A/924:927	No text annotation	homologous IL_8P9A_421 IL_85033.2
IL_8P4V_190	1/A/893:899, 1/A/910:919	No text annotation	homologous IL_8P9A_422 IL_57741.1
IL_8P4V_191	1/A/985:990, 1/A/1014:1016	No text annotation	homologous IL_8P9A_423 IL_97273.1
IL_8P4V_192	1/A/990:994, 1/A/1010:1014	No text annotation	homologous IL_8P9A_424 IL_17136.7
IL_8P4V_193	1/A/1034:1036, 1/A/1095:1101	No text annotation	homologous IL_8P9A_425 IL_82706.1
IL_8P4V_194	1/A/1041:1044, 1/A/1074:1077	No text annotation	homologous IL_8P9A_426 IL_85033.2
IL_8P4V_474	1/A/1051:1053, 1/A/1066:1067	Single bulged U	homologous IL_8P9A_427 IL_89505.4
IL_8P4V_196	1/A/1111:1118, 1/A/1129:1134	8x6 Sarcin-Ricin with inserted Y; G-bulge	homologous IL_8P9A_428 IL_41756.4
IL_8P4V_197	1/A/1146:1147, 1/A/1630:1632	Single bulged A	homologous IL_8P9A_429 IL_31462.6
IL_8P4V_198	1/A/1149:1151, 1/A/1627:1628	Single bulged G	homologous IL_8P9A_430 IL_00225.13
IL_8P4V_199	1/A/1157:1160, 1/A/1617:1621	C-loop	homologous IL_8C3A_449 NA
IL_8P4V_200	1/A/1173:1175, 1/A/1464:1466	Isolated non-canonical cWW pair	homologous IL_8P9A_432 IL_87907.2
IL_8P4V_201	1/A/1178:1179, 1/A/1459:1461	Minor groove platform	homologous IL_8P9A_433 IL_51454.3
IL_8P4V_202	1/A/1213:1215, 1/A/1448:1450	Isolated non-canonical cWW pair	homologous IL_8C3A_452 NA
IL_8P4V_203	1/A/1224:1230, 1/A/1257:1259	No text annotation
IL_8P4V_204	1/A/1224:1233, 1/A/1252:1259	No text annotation
IL_8P4V_205	1/A/1230:1233, 1/A/1252:1257	No text annotation
IL_8P4V_206	1/A/1234:1236, 1/A/1249:1251	No text annotation	homologous IL_8P9A_436 IL_14688.1
IL_8P4V_207	1/A/1268:1270, 1/A/1440:1441	Single bulged U	homologous IL_8C3A_455 NA
IL_8P4V_208	1/A/1272:1276, 1/A/1436:1438	No text annotation	geometric IL_8C3A_456 NA
IL_8P4V_209	1/A/1272:1278, 1/A/1430:1438	No text annotation	geometric IL_4V88_510 NA
IL_8P4V_210	1/A/1276:1278, 1/A/1430:1436	No text annotation	homologous IL_8P9A_440 IL_49061.1
IL_8P4V_211	1/A/1280:1281, 1/A/1426:1428	Single bulged A	homologous IL_8C3A_458 NA
IL_8P4V_212	1/A/1290:1292, 1/A/1323:1325	Isolated non-canonical cWW pair	homologous IL_8C3A_459 NA
IL_8P4V_213	1/A/1306:1308, 1/A/1317:1318	Minor groove platform	homologous IL_8C3A_460 NA
IL_8P4V_214	1/A/1339:1342, 1/A/1383:1385	Isolated non-canonical cWW pair	homologous IL_8P9A_444 IL_87907.2
IL_8P4V_475	1/A/1345:1348, 1/A/1377:1380	No text annotation	homologous IL_8P9A_445 IL_78800.1
IL_8P4V_216	1/A/1352:1354, 1/A/1369:1373	No text annotation	homologous IL_8C3A_464 NA
IL_8P4V_217	1/A/1389:1391, 1/A/1407:1412	No text annotation	geometric IL_8C3A_465 NA
IL_8P4V_218	1/A/1480:1487, 1/A/1519:1527	No text annotation	homologous IL_8C3A_466 NA
IL_8P4V_219	1/A/1488:1494, 1/A/1513:1518	No text annotation	homologous IL_8P9A_449 IL_22564.1
IL_8P4V_220	1/A/1495:1498, 1/A/1509:1512	No text annotation	homologous IL_8P9A_450 IL_77658.1
IL_8P4V_221	1/A/1540:1545, 1/A/1566:1571	No text annotation	homologous IL_8P9A_451 IL_85536.2
IL_8P4V_222	1/A/1636:1638, 1/A/1764:1767	No text annotation	homologous IL_8C3A_470 NA
IL_8P4V_223	1/A/1638:1641, 1/A/1760:1764	No text annotation	homologous IL_8P9A_453 IL_65718.4
IL_8P4V_224	1/A/1642:1644, 1/A/1757:1759	Isolated non-canonical cWW pair	homologous IL_8P9A_454 IL_87907.2
IL_8P4V_225	1/A/1644:1647, 1/A/1753:1757	No text annotation	homologous IL_8P9A_455 IL_64231.5
IL_8P4V_226	1/A/1650:1652, 1/A/1748:1750	Isolated non-canonical cWW pair	homologous IL_8P9A_456 IL_87907.2
IL_8P4V_227	1/A/1653:1656, 1/A/1744:1747	Double sheared	homologous IL_8P9A_457 IL_09705.15
IL_8P4V_228	1/A/1656:1658, 1/A/1743:1744	Single bulged U	homologous IL_8P9A_458 IL_89505.4
IL_8P4V_229	1/A/1665:1667, 1/A/1734:1736	Isolated non-canonical cWW pair	homologous IL_8P9A_459 IL_07785.1
IL_8P4V_230	1/A/1669:1672, 1/A/1729:1732	Double sheared	homologous IL_8P9A_460 IL_09705.15
IL_8P4V_231	1/A/1672:1674, 1/A/1727:1729	Isolated non-canonical cWW pair	homologous IL_8P9A_461 IL_87907.2
IL_8P4V_232	1/A/1675:1678, 1/A/1723:1726	No text annotation	homologous IL_8P9A_462 IL_77658.1
IL_8P4V_233	1/AR/7:8, 1/AT/150:152	Single bulged C	homologous IL_8P9A_231 IL_61258.15
IL_8P4V_234	1/AR/13:15, 1/AT/144:145	Single bulged U	homologous IL_8P9A_232 IL_89505.4
IL_8P4V_235	1/AR/27:28, 1/AR/56:58	Single stack bend	homologous IL_8P9A_233 IL_90729.1
IL_8P4V_236	1/AR/31:38, 1/AR/45:53	tSH-tHW-tHH-tHS	homologous IL_8P9A_234 IL_84694.2
IL_8P4V_237	1/AR/82:89, 1/AR/97:103	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_235 IL_65594.1
IL_8P4V_238	1/AR/123:124, 1/AR/144:149	No text annotation	homologous IL_8P9A_236 IL_92634.2
IL_8P4V_239	1/AR/125:127, 1/AR/141:143	Isolated non-canonical cWW pair	homologous IL_8P9A_237 IL_87907.2
IL_8P4V_240	1/AR/163:165, 1/AR/257:258	Single stack bend	homologous IL_8P9A_238 IL_90729.1
IL_8P4V_241	1/AR/169:175, 1/AR/243:253	No text annotation
IL_8P4V_242	1/AR/177:178, 1/AR/238:241	No text annotation	geometric IL_5TBW_501 NA
IL_8P4V_243	1/AR/189:191, 1/AR/204:205	Single bulged U	homologous IL_8P9A_241 IL_89505.4
IL_8P4V_244	1/AR/337:339, 1/AT/25:26	Single bulged A	homologous IL_8P9A_242 IL_31462.6
IL_8P4V_245	1/AR/376:379, 1/AR/390:403	No text annotation	geometric IL_5TBW_014 NA
IL_8P4V_476	1/AR/404:410, 1/AT/13:19	No text annotation	homologous IL_8P9A_244 IL_04021.2
IL_8P4V_247	1/AR/429:431, 1/AR/628:630	Isolated non-canonical cWW pair	homologous IL_8P9A_245 IL_07785.1
IL_8P4V_248	1/AR/512:513, 1/AR/577:579	Single bulged A	homologous IL_8P9A_246 IL_31462.6
IL_8P4V_249	1/AR/517:525, 1/AR/567:573	No text annotation	homologous IL_8P9A_247 IL_58126.1
IL_8P4V_250	1/AR/531:538, 1/AR/553:561	No text annotation	homologous IL_8P9A_248 IL_43858.1
IL_8P4V_251	1/AR/668:670, 1/AR/792:794	Isolated non-canonical cWW pair	homologous IL_8P9A_249 IL_87907.2
IL_8P4V_252	1/AR/680:684, 1/AR/696:700	No text annotation	homologous IL_8P9A_250 IL_74367.1
IL_8P4V_253	1/AR/725:728, 1/AR/741:745	No text annotation	homologous IL_8P9A_251 IL_23774.1
IL_8P4V_254	1/AR/752:753, 1/AR/779:781	Single bulged A	homologous IL_8P9A_252 IL_31462.6
IL_8P4V_255	1/AR/755:756, 1/AR/775:777	Single bulged U	homologous IL_8P9A_253 IL_89505.4
IL_8P4V_256	1/AR/758:763, 1/AR/768:773	No text annotation	homologous IL_8P9A_254 IL_85536.2
IL_8P4V_257	1/AR/803:805, 1/AR/938:940	Isolated non-canonical cWW pair	homologous IL_8P9A_255 IL_87907.2
IL_8P4V_258	1/AR/805:809, 1/AR/931:938	No text annotation	homologous IL_8P9A_256 IL_54041.2
IL_8P4V_259	1/AR/833:834, 1/AR/859:861	Single bulged G	homologous IL_8P9A_257 IL_00225.13
IL_8P4V_260	1/AR/834:838, 1/AR/855:859	Triple sheared	homologous IL_8P9A_258 IL_50730.2
IL_8P4V_261	1/AR/869:872, 1/AR/888:890	No text annotation	homologous IL_8P9A_259 IL_51387.2
IL_8P4V_262	1/AR/873:875, 1/AR/886:887	Single bulged U	homologous IL_8P9A_260 IL_89505.4
IL_8P4V_263	1/AR/907:909, 1/AR/919:923	No text annotation	homologous IL_8P9A_261 IL_06549.2
IL_8P4V_264	1/AR/954:956, 1/AR/965:967	Isolated non-canonical cWW pair	homologous IL_8P9A_262 IL_28037.2
IL_8P4V_265	1/AR/969:970, 1/AR/1111:1113	Single stack bend	homologous IL_8P9A_263 IL_26793.1
IL_8P4V_266	1/AR/977:981, 1/AR/1102:1104	No text annotation	homologous IL_8P9A_264 IL_25463.1
IL_8P4V_267	1/AR/983:985, 1/AR/1099:1100	Single bulged G	homologous IL_8P9A_265 IL_00225.13
IL_8P4V_268	1/AR/991:997, 1/AR/1052:1058	7x7 Sarcin-Ricin with intercalated A; G-bulge	homologous IL_8P9A_266 IL_29198.2
IL_8P4V_269	1/AR/997:998, 1/AR/1050:1052	Minor groove platform	homologous IL_8P9A_267 IL_51454.3
IL_8P4V_270	1/AR/999:1004, 1/AR/1046:1049	No text annotation	homologous IL_8P9A_268 IL_26222.2
IL_8P4V_271	1/AR/1006:1009, 1/AR/1041:1044	No text annotation	homologous IL_8P9A_269 IL_77658.1
IL_8P4V_272	1/AR/1009:1011, 1/AR/1039:1041	Isolated non-canonical cWW pair	homologous IL_8P9A_270 IL_87907.2
IL_8P4V_477	1/AR/1014:1018, 1/AR/1034:1036	No text annotation	homologous IL_8P9A_271 IL_11415.1
IL_8P4V_274	1/AR/1069:1071, 1/AR/1087:1089	Isolated non-canonical cWW pair	homologous IL_8P9A_272 IL_87907.2
IL_8P4V_275	1/AR/1074:1076, 1/AR/1083:1084	Single bulged A	homologous IL_8P9A_273 IL_31462.6
IL_8P4V_276	1/AR/1120:1122, 1/AR/1136:1138	Isolated non-canonical cWW pair	homologous IL_8P9A_274 IL_87907.2
IL_8P4V_277	1/AR/1167:1171, 1/AR/1328:1332	UAA/GAN	homologous IL_8P9A_276 IL_38507.2
IL_8P4V_278	1/AR/1173:1180, 1/AR/1325:1326	SSU/LSU pseudoknot	homologous IL_8P9A_277 IL_41203.4
IL_8P4V_279	1/AR/1180:1182, 1/AR/1324:1325	Single bulged U	homologous IL_8P9A_278 IL_89505.4
IL_8P4V_280	1/AR/1187:1194, 1/AR/1314:1319	No text annotation	homologous IL_8P9A_279 IL_77278.1
IL_8P4V_281	1/AR/1194:1205, 1/AR/1299:1314	No text annotation	homologous IL_8P9A_280 IL_83149.1
IL_8P4V_282	1/AR/1207:1209, 1/AR/1296:1297	Single bulged U	homologous IL_8P9A_281 IL_89505.4
IL_8P4V_283	1/AR/1218:1226, 1/AR/1283:1287	Kink-turn	homologous IL_8P9A_282 IL_99692.2
IL_8P4V_284	1/AR/1234:1238, 1/AR/1250:1254	No text annotation	homologous IL_8P9A_283 IL_16218.2
IL_8P4V_285	1/AR/1262:1266, 1/AR/1275:1277	No text annotation	homologous IL_8P9A_284 IL_51387.2
IL_8P4V_286	1/AR/1376:1378, 1/AR/1428:1431	No text annotation	homologous IL_8P9A_285 IL_42997.3
IL_8P4V_287	1/AR/1385:1387, 1/AR/1420:1421	Single bulged A	homologous IL_8P9A_286 IL_31462.6
IL_8P4V_288	1/AR/1388:1395, 1/AR/1415:1419	Kink-turn	homologous IL_8P9A_287 IL_70923.9
IL_8P4V_289	1/AR/1398:1400, 1/AR/1411:1412	Single bulged A	homologous IL_8P9A_288 IL_31462.6
IL_8P4V_290	1/AR/1444:1450, 1/AR/2354:2359	7x6 Sarcin-Ricin; G-bulge	homologous IL_8P9A_289 IL_26307.2
IL_8P4V_291	1/AR/1501:1505, 1/AR/1513:1515	C-loop	homologous IL_8P9A_290 IL_63596.11
IL_8P4V_292	1/AR/1532:1536, 1/AR/1585:1590	UAA/GAN	homologous IL_8P9A_291 IL_38507.2
IL_8P4V_293	1/AR/1537:1542, 1/AR/1551:1584	No text annotation
IL_8P4V_294	1/AR/1618:1620, 1/AR/1825:1826	Single stack bend	geometric IL_5TBW_009 NA
IL_8P4V_295	1/AR/1623:1624, 1/AR/1819:1822	Major groove platform related	homologous IL_8P9A_293 IL_48076.6
IL_8P4V_296	1/AR/1627:1631, 1/AR/1811:1816	No text annotation	homologous IL_8P9A_294 IL_56317.1
IL_8P4V_297	1/AR/1645:1649, 1/AR/1806:1810	Triple sheared	homologous IL_8P9A_295 IL_50730.2
IL_8P4V_298	1/AR/1661:1663, 1/AR/1786:1788	Isolated non-canonical cWW pair	homologous IL_8P9A_296 IL_87907.2
IL_8P4V_299	1/AR/1669:1670, 1/AR/1778:1780	Single bulged C	homologous IL_8P9A_297 IL_61258.15
IL_8P4V_300	1/AR/1670:1671, 1/AR/1776:1778	Single stack bend	homologous IL_8P9A_298 IL_90729.1
IL_8P4V_301	1/AR/1694:1698, 1/AR/1747:1752	No text annotation	homologous IL_8P9A_299 IL_00981.1
IL_8P4V_302	1/AR/1702:1707, 1/AR/1737:1743	No text annotation	homologous IL_8P9A_300 IL_23038.1
IL_8P4V_303	1/AR/1711:1717, 1/AR/1727:1733	No text annotation	homologous IL_8P9A_301 IL_69543.3
IL_8P4V_304	1/AR/1883:1889, 1/AR/2346:2349	No text annotation	homologous IL_8P9A_302 IL_22829.2
IL_8P4V_305	1/AR/1895:1897, 1/AR/2338:2340	No text annotation	homologous IL_8P9A_303 IL_67095.2
IL_8P4V_306	1/AR/1898:1901, 1/AR/2336:2337	Major groove platform; stack outside cWW	geometric IL_5TBW_076 NA
IL_8P4V_307	1/AR/1898:1906, 1/AR/2333:2337	No text annotation	geometric IL_5TBW_474 NA
IL_8P4V_308	1/AR/1901:1906, 1/AR/2333:2336	No text annotation	homologous IL_8P9A_306 IL_76758.2
IL_8P4V_309	1/AR/1918:1923, 1/AR/1928:1934	No text annotation	homologous IL_8P9A_307 IL_47346.2
IL_8P4V_310	1/AR/1940:1942, 1/AR/2106:2108	Isolated non-canonical cWW pair	homologous IL_8P9A_308 IL_87907.2
IL_8P4V_478	1/AR/1947:1948, 1/AR/2098:2101	No text annotation	homologous IL_8P9A_309 IL_73355.1
IL_8P4V_312	1/AR/2128:2129, 1/AR/2323:2325	Single bulged A	homologous IL_8P9A_310 IL_31462.6
IL_8P4V_313	1/AR/2156:2161, 1/AR/2173:2180	No text annotation	homologous IL_8P9A_311 IL_20047.1
IL_8P4V_314	1/AR/2196:2199, 1/AR/2245:2246	Minor groove platform, major groove intercalation	homologous IL_8P9A_312 IL_95583.2
IL_8P4V_315	1/AR/2200:2201, 1/AR/2241:2244	Major groove intercalation	homologous IL_8P9A_313 IL_82107.4
IL_8P4V_316	1/AR/2204:2206, 1/AR/2237:2238	Single bulged U	homologous IL_8P9A_314 IL_89505.4
IL_8P4V_317	1/AR/2206:2210, 1/AR/2235:2237	No text annotation	homologous IL_8P9A_315 IL_36516.3
IL_8P4V_318	1/AR/2211:2217, 1/AR/2228:2234	No text annotation	homologous IL_8P9A_316 IL_88116.2
IL_8P4V_319	1/AR/2276:2277, 1/AR/2307:2310	No text annotation	geometric IL_8C3A_094 NA
IL_8P4V_320	1/AR/2277:2288, 1/AR/2304:2307	No text annotation	homologous IL_8P9A_318 IL_42218.2
IL_8P4V_321	1/AR/2391:2394, 1/AR/2986:2988	No text annotation	homologous IL_8P9A_319 IL_55516.2
IL_8P4V_322	1/AR/2396:2398, 1/AR/2981:2984	No text annotation	homologous IL_8P9A_320 IL_83389.2
IL_8P4V_323	1/AR/2409:2411, 1/AR/2811:2812	Single bulged U	homologous IL_8P9A_321 IL_89505.4
IL_8P4V_324	1/AR/2412:2413, 1/AR/2807:2810	Minor groove platform	homologous IL_8P9A_322 IL_51454.3
IL_8P4V_325	1/AR/2423:2425, 1/AR/2604:2607	No text annotation	homologous IL_8P9A_323 IL_85599.2
IL_8P4V_326	1/AR/2520:2526, 1/AR/2584:2587	No text annotation	homologous IL_8P9A_324 IL_00555.1
IL_8P4V_327	1/AR/2614:2615, 1/AR/2625:2627	Single bulged A	homologous IL_8P9A_325 IL_31462.6
IL_8P4V_328	1/AR/2666:2668, 1/AR/2686:2690	No text annotation	homologous IL_8P9A_326 IL_61476.2
IL_8P4V_329	1/AR/2718:2721, 1/AR/2735:2738	No text annotation	homologous IL_8P9A_327 IL_85033.2
IL_8P4V_330	1/AR/2770:2773, 1/AR/2787:2788	Single stack bend with bulge	homologous IL_8P9A_328 IL_90729.1
IL_8P4V_331	1/AR/2823:2824, 1/AR/2865:2867	Major groove platform	homologous IL_8P9A_329 IL_48076.6
IL_8P4V_332	1/AR/2824:2826, 1/AR/2863:2865	Isolated non-canonical cWW pair	homologous IL_8P9A_330 IL_87907.2
IL_8P4V_333	1/AR/2826:2830, 1/AR/2858:2863	No text annotation
IL_8P4V_334	1/AR/2835:2839, 1/AR/2849:2853	No text annotation	homologous IL_8P9A_333 IL_17948.2
IL_8P4V_335	1/AR/2876:2877, 1/AR/2949:2951	No text annotation	homologous IL_8P9A_334 IL_07039.3
IL_8P4V_336	1/AR/2879:2881, 1/AR/2943:2947	No text annotation	homologous IL_8P9A_335 IL_07785.1
IL_8P4V_337	1/AR/2881:2882, 1/AR/2940:2943	No text annotation	homologous IL_8C3A_117 NA
IL_8P4V_338	1/AR/2889:2891, 1/AR/2912:2914	Isolated non-canonical cWW pair	geometric IL_5TBW_110 NA
IL_8P4V_339	1/AR/2891:2892, 1/AR/2909:2912	No text annotation	homologous IL_8P9A_339 IL_02555.1
IL_8P4V_340	1/AR/2918:2920, 1/AR/2926:2928	Isolated non-canonical cWW pair	homologous IL_8P9A_340 IL_87907.2
IL_8P4V_341	1/AR/2960:2961, 1/AR/2970:2972	Single bulged A	homologous IL_8P9A_341 IL_31462.6
IL_8P4V_342	1/AR/3004:3007, 1/AR/3139:3144	Double sheared	homologous IL_8P9A_342 IL_09705.15
IL_8P4V_343	1/AR/3012:3014, 1/AR/3040:3042	Isolated non-canonical cWW pair	homologous IL_8P9A_343 IL_28037.2
IL_8P4V_344	1/AR/3018:3025, 1/AR/3030:3036	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_344 IL_04346.10
IL_8P4V_345	1/AR/3047:3051, 1/AR/3091:3094	No text annotation	homologous IL_8P9A_345 IL_83150.2
IL_8P4V_346	1/AR/3054:3059, 1/AR/3084:3088	No text annotation	homologous IL_8P9A_346 IL_21001.1
IL_8P4V_347	1/AR/3063:3064, 1/AR/3077:3080	No text annotation	homologous IL_8P9A_347 NA
IL_8P4V_348	1/AR/3103:3107, 1/AR/3127:3131	UAA/GAN	homologous IL_8P9A_348 IL_38507.2
IL_8P4V_349	1/AR/3162:3166, 1/AR/3284:3288	No text annotation	homologous IL_8P9A_349 IL_49751.4
IL_8P4V_350	1/AR/3168:3170, 1/AR/3280:3282	Isolated non-canonical cWW pair	homologous IL_8P9A_350 IL_28037.2
IL_8P4V_351	1/AR/3177:3179, 1/AR/3210:3211	Single bulged A	homologous IL_8P9A_351 IL_31462.6
IL_8P4V_352	1/AR/3179:3188, 1/AR/3204:3210	No text annotation	homologous IL_8P9A_352 IL_42231.1
IL_8P4V_353	1/AR/3225:3229, 1/AR/3258:3260	No text annotation	homologous IL_8P9A_353 IL_82741.2
IL_8P4V_354	1/AR/3233:3235, 1/AR/3252:3254	Isolated non-canonical cWW pair	homologous IL_8P9A_354 IL_87907.2
IL_8P4V_355	1/AR/3235:3238, 1/AR/3249:3252	No text annotation	homologous IL_8P9A_355 IL_77658.1
IL_8P4V_356	1/AR/3300:3303, 1/AR/3311:3314	No text annotation	homologous IL_8P9A_356 IL_77658.1
IL_8P4V_357	1/AR/3318:3320, 1/AR/3387:3388	Single bulged U	homologous IL_8P9A_357 IL_89505.4
IL_8P4V_358	1/AR/3324:3325, 1/AR/3381:3383	Single bulged U	homologous IL_8P9A_358 IL_89505.4
IL_8P4V_359	1/AR/3328:3330, 1/AR/3373:3378	No text annotation	homologous IL_8P9A_359 IL_43622.1
IL_8P4V_360	1/AR/3332:3337, 1/AR/3367:3371	No text annotation	homologous IL_8P9A_360 IL_70411.2
IL_8P4V_361	1/AR/3340:3342, 1/AR/3363:3364	Single bulged U	homologous IL_8P9A_361 IL_89505.4
IL_8P4V_362	1/AR/3342:3345, 1/AR/3360:3363	Double sheared; A in syn	homologous IL_8P9A_362 IL_09705.15
IL_8P4V_363	1/AR/3349:3350, 1/AR/3353:3356	Multiple bulged bases	homologous IL_8P9A_363 IL_84476.1
IL_8P4V_364	1/AS/15:16, 1/AS/63:65	Single bulged A	homologous IL_8P9A_364 IL_31462.6
IL_8P4V_365	1/AS/21:27, 1/AS/53:58	No text annotation	homologous IL_8P9A_365 IL_18487.1
IL_8P4V_366	1/AS/28:29, 1/AS/49:52	No text annotation	homologous IL_8P9A_366 IL_15052.4
IL_8P4V_367	1/AS/29:30, 1/AS/47:49	Single stack bend	homologous IL_8P9A_367 IL_90729.1
IL_8P4V_368	1/AS/32:36, 1/AS/41:45	No text annotation	homologous IL_8P9A_368 IL_58103.11
IL_8P4V_369	1/AS/72:80, 1/AS/100:106	8x7 Sarcin-Ricin; G-bulge	homologous IL_8P9A_369 IL_04346.10
IL_8P4V_370	1/AS/84:87, 1/AS/94:96	Isolated non-canonical cWW pair	homologous IL_8P9A_370 IL_87907.2
IL_8P4V_371	1/AT/64:66, 1/AT/93:96	No text annotation	homologous IL_8P9A_371 IL_07785.1
IL_8P4V_372	1/AT/68:69, 1/AT/89:91	Single bulged U	homologous IL_8P9A_372 IL_89505.4
IL_8P4V_373	1/sR/24:26, 1/sR/600:601	Single bulged C	homologous IL_8P9A_373 IL_61258.15
IL_8P4V_374	1/sR/35:37, 1/sR/471:473	Isolated non-canonical cWW pair	homologous IL_8P9A_374 IL_87907.2
IL_8P4V_375	1/sR/37:41, 1/sR/466:471	No text annotation	homologous IL_8P9A_375 IL_12697.1
IL_8P4V_376	1/sR/42:48, 1/sR/431:433	No text annotation	geometric IL_4V88_387 NA
IL_8P4V_377	1/sR/50:52, 1/sR/428:429	Minor groove platform	homologous IL_8P9A_377 IL_51454.3
IL_8P4V_378	1/sR/58:63, 1/sR/87:89	No text annotation	homologous IL_8P9A_378 IL_61299.4
IL_8P4V_379	1/sR/64:69, 1/sR/82:86	No text annotation	homologous IL_8P9A_379 IL_21667.1
IL_8P4V_380	1/sR/109:112, 1/sR/302:305	No text annotation	homologous IL_8P9A_380 IL_77658.1
IL_8P4V_381	1/sR/113:116, 1/sR/300:301	Multiple bulged bases	homologous IL_8P9A_381 IL_82107.4
IL_8P4V_382	1/sR/117:122, 1/sR/295:299	No text annotation	homologous IL_8P9A_382 IL_29223.1
IL_8P4V_383	1/sR/143:149, 1/sR/165:172	No text annotation	homologous IL_8P9A_383 IL_80604.6
IL_8P4V_384	1/sR/150:152, 1/sR/162:164	No text annotation	homologous IL_8P9A_384 IL_44465.1
IL_8P4V_479	1/sR/186:189, 1/sR/196:199	Double sheared	homologous IL_8P9A_385 IL_09705.15
IL_8P4V_386	1/sR/204:206, 1/sR/259:263	No text annotation	homologous IL_8P9A_386 IL_51387.2
IL_8P4V_387	1/sR/206:208, 1/sR/257:259	Isolated non-canonical cWW pair	homologous IL_8P9A_387 IL_28037.2
IL_8P4V_388	1/sR/213:243, 1/sR/250:252	No text annotation
IL_8P4V_389	1/sR/265:267, 1/sR/288:289	Single bulged A	homologous IL_8P9A_388 IL_31462.6
IL_8P4V_390	1/sR/270:273, 1/sR/283:285	No text annotation	homologous IL_8P9A_389 IL_15698.3
IL_8P4V_391	1/sR/275:276, 1/sR/279:281	Single bulged U	homologous IL_8P9A_390 IL_89505.4
IL_8P4V_392	1/sR/311:316, 1/sR/348:355	Kink-turn with non-sequential stacking	homologous IL_8P9A_391 IL_46174.3
IL_8P4V_393	1/sR/318:323, 1/sR/345:346	No text annotation	homologous IL_8P9A_392 IL_47074.2
IL_8P4V_394	1/sR/363:365, 1/sR/376:381	No text annotation	homologous IL_8P9A_393 IL_73789.1
IL_8P4V_395	1/sR/389:391, 1/sR/406:408	Isolated cWH basepair	homologous IL_8P9A_394 IL_10167.6
IL_8P4V_396	1/sR/411:413, 1/sR/420:422	No text annotation	homologous IL_8P9A_395 IL_42997.3
IL_8P4V_397	1/sR/439:441, 1/sR/463:464	Single bulged U	homologous IL_8P9A_396 IL_89505.4
IL_8P4V_398	1/sR/443:447, 1/sR/460:461	No text annotation	homologous IL_8P9A_397 IL_03109.3
IL_8P4V_399	1/sR/447:448, 1/sR/458:460	Single bulged G	homologous IL_8P9A_398 IL_00225.13
IL_8P4V_400	1/sR/481:482, 1/sR/505:507	Single bulged A	homologous IL_8P9A_399 IL_31462.6
IL_8P4V_480	1/sR/517:518, 1/sR/533:535	No text annotation	homologous IL_8CRE_419 IL_51454.3
IL_8P4V_402	1/sR/518:520, 1/sR/532:533	Minor groove platform	homologous IL_8P9A_401 IL_51454.3
IL_8P4V_403	1/sR/550:557, 1/sR/587:588	SSU/LSU pseudoknot	homologous IL_8P9A_402 IL_41203.4
IL_8P4V_404	1/sR/557:559, 1/sR/586:587	Single bulged U	homologous IL_8P9A_403 IL_89505.4
IL_8P4V_405	1/sR/562:568, 1/sR/575:583	No text annotation	homologous IL_8P9A_404 IL_54177.4
IL_8P4V_406	1/sR/616:622, 1/sR/1104:1105	No text annotation	homologous IL_8P9A_405 IL_38186.6
IL_8P4V_407	1/sR/624:626, 1/sR/973:975	Isolated non-canonical cWW pair	homologous IL_8P9A_406 IL_87907.2
IL_8P4V_408	1/sR/627:631, 1/sR/968:972	No text annotation	homologous IL_8P9A_407 IL_17136.7
IL_8P4V_409	1/sR/646:648, 1/sR/686:688	No text annotation	homologous IL_8P9A_408 IL_44465.1
IL_8P4V_481	1/sR/649:653, 1/sR/677:685	No text annotation
IL_8P4V_411	1/sR/703:708, 1/sR/730:735	No text annotation	homologous IL_8P9A_410 IL_85536.2
IL_8P4V_412	1/sR/746:747, 1/sR/802:805	No text annotation	homologous IL_8P9A_412 IL_68140.4
IL_8P4V_413	1/sR/748:750, 1/sR/799:801	Isolated non-canonical cWW pair	homologous IL_8P9A_413 IL_28037.2
IL_8P4V_414	1/sR/751:759, 1/sR/791:798	No text annotation	homologous IL_8P9A_414 IL_59049.1
IL_8P4V_415	1/sR/819:822, 1/sR/850:852	Isolated non-canonical cWW pair	homologous IL_8P9A_415 IL_07785.1
IL_8P4V_417	1/sR/865:866, 1/sR/962:965	Major groove platform; stack outside cWW	geometric IL_4V88_428 NA
IL_8P4V_418	1/sR/868:870, 1/sR/957:960	Isolated non-canonical cWW pair	homologous IL_8P9A_418 IL_57744.1
IL_8P4V_419	1/sR/871:873, 1/sR/955:956	Single stack bend	geometric IL_4V9F_081 IL_26793.1
IL_8P4V_420	1/sR/873:874, 1/sR/953:955	Single stack bend	geometric IL_5J7L_269 IL_26793.1
IL_8P4V_421	1/sR/874:878, 1/sR/950:953	No text annotation	homologous IL_8P9A_420 IL_85033.2
IL_8P4V_422	1/sR/885:888, 1/sR/924:927	No text annotation	homologous IL_8P9A_421 IL_85033.2
IL_8P4V_423	1/sR/893:899, 1/sR/910:919	No text annotation	homologous IL_8P9A_422 IL_57741.1
IL_8P4V_424	1/sR/985:990, 1/sR/1014:1016	No text annotation	homologous IL_8P9A_423 IL_97273.1
IL_8P4V_425	1/sR/990:994, 1/sR/1010:1014	No text annotation	homologous IL_8P9A_424 IL_17136.7
IL_8P4V_426	1/sR/1034:1036, 1/sR/1095:1101	No text annotation	homologous IL_8P9A_425 IL_82706.1
IL_8P4V_427	1/sR/1041:1044, 1/sR/1074:1077	No text annotation	homologous IL_8P9A_426 IL_85033.2
IL_8P4V_428	1/sR/1051:1053, 1/sR/1066:1067	Single bulged U	homologous IL_8P9A_427 IL_89505.4
IL_8P4V_429	1/sR/1111:1118, 1/sR/1129:1134	8x6 Sarcin-Ricin with inserted Y; G-bulge	homologous IL_8P9A_428 IL_41756.4
IL_8P4V_430	1/sR/1146:1147, 1/sR/1630:1632	Single bulged A	homologous IL_8P9A_429 IL_31462.6
IL_8P4V_431	1/sR/1149:1151, 1/sR/1627:1628	Single bulged G	homologous IL_8P9A_430 IL_00225.13
IL_8P4V_432	1/sR/1157:1160, 1/sR/1617:1621	C-loop	homologous IL_8P9A_431 IL_63596.11
IL_8P4V_433	1/sR/1173:1175, 1/sR/1464:1466	Isolated non-canonical cWW pair	homologous IL_8P9A_432 IL_87907.2
IL_8P4V_482	1/sR/1178:1179, 1/sR/1459:1461	Minor groove platform	homologous IL_8P9A_433 IL_51454.3
IL_8P4V_435	1/sR/1213:1215, 1/sR/1448:1450	Isolated non-canonical cWW pair	homologous IL_8P9A_434 IL_87907.2
IL_8P4V_483	1/sR/1222:1233, 1/sR/1252:1261	No text annotation
IL_8P4V_437	1/sR/1234:1236, 1/sR/1249:1251	No text annotation	homologous IL_8P9A_436 IL_14688.1
IL_8P4V_484	1/sR/1268:1270, 1/sR/1440:1441	Single bulged U	homologous IL_8P9A_437 IL_89505.4
IL_8P4V_485	1/sR/1272:1276, 1/sR/1436:1438	No text annotation	homologous IL_8P9A_438 IL_76319.5
IL_8P4V_486	1/sR/1276:1278, 1/sR/1430:1436	No text annotation	homologous IL_8P9A_440 IL_49061.1
IL_8P4V_440	1/sR/1280:1281, 1/sR/1426:1428	Single bulged A	homologous IL_8P9A_441 IL_31462.6
IL_8P4V_487	1/sR/1290:1292, 1/sR/1323:1325	Isolated cWH basepair	homologous IL_8P9A_442 IL_10167.6
IL_8P4V_442	1/sR/1306:1308, 1/sR/1317:1318	Minor groove platform	homologous IL_8P9A_443 IL_51454.3
IL_8P4V_443	1/sR/1339:1342, 1/sR/1383:1385	Isolated non-canonical cWW pair	homologous IL_8P9A_444 IL_87907.2
IL_8P4V_488	1/sR/1345:1348, 1/sR/1377:1380	No text annotation	homologous IL_8P9A_445 IL_78800.1
IL_8P4V_489	1/sR/1352:1354, 1/sR/1369:1373	Isolated non-canonical cWW pair	homologous IL_8P9A_471 IL_07785.1
IL_8P4V_446	1/sR/1389:1391, 1/sR/1407:1412	Major groove platform; stack outside cWW	geometric IL_4V88_458 NA
IL_8P4V_490	1/sR/1480:1487, 1/sR/1519:1527	No text annotation	homologous IL_8P9A_448 IL_91698.1
IL_8P4V_448	1/sR/1488:1494, 1/sR/1513:1518	No text annotation	homologous IL_8P9A_449 IL_22564.1
IL_8P4V_449	1/sR/1495:1498, 1/sR/1509:1512	No text annotation	homologous IL_8P9A_450 IL_77658.1
IL_8P4V_450	1/sR/1540:1545, 1/sR/1566:1571	No text annotation	homologous IL_8P9A_451 IL_85536.2
IL_8P4V_451	1/sR/1636:1638, 1/sR/1764:1767	No text annotation	homologous IL_8P9A_452 IL_61438.4
IL_8P4V_452	1/sR/1638:1641, 1/sR/1760:1764	No text annotation	homologous IL_8P9A_453 IL_65718.4
IL_8P4V_453	1/sR/1642:1644, 1/sR/1757:1759	Isolated non-canonical cWW pair	homologous IL_8P9A_454 IL_87907.2
IL_8P4V_454	1/sR/1644:1647, 1/sR/1753:1757	No text annotation	homologous IL_8P9A_455 IL_64231.5
IL_8P4V_455	1/sR/1650:1652, 1/sR/1748:1750	Isolated non-canonical cWW pair	homologous IL_8P9A_456 IL_87907.2
IL_8P4V_456	1/sR/1653:1656, 1/sR/1744:1747	Double sheared	homologous IL_8P9A_457 IL_09705.15
IL_8P4V_457	1/sR/1656:1658, 1/sR/1743:1744	Single bulged U	homologous IL_8P9A_458 IL_89505.4
IL_8P4V_458	1/sR/1665:1667, 1/sR/1734:1736	Isolated non-canonical cWW pair	homologous IL_8P9A_459 IL_07785.1
IL_8P4V_459	1/sR/1669:1672, 1/sR/1729:1732	Double sheared	homologous IL_8P9A_460 IL_09705.15
IL_8P4V_460	1/sR/1672:1674, 1/sR/1727:1729	Isolated non-canonical cWW pair	homologous IL_8P9A_461 IL_87907.2
IL_8P4V_461	1/sR/1675:1678, 1/sR/1723:1726	No text annotation	homologous IL_8P9A_462 IL_77658.1
IL_8P4V_462	1/sR/1678:1682, 1/sR/1719:1723	Triple sheared	homologous IL_8P9A_463 IL_50730.2
IL_8P4V_463	1/sR/1688:1690, 1/sR/1711:1713	Isolated tWW contact	homologous IL_8P9A_464 IL_10167.6

Problematic loops

loop id	Problem	Sequence
IL_8P4V_010	Deprecated	No text annotation
IL_8P4V_045	complementary	No text annotation
IL_8P4V_052	Deprecated	No text annotation
IL_8P4V_065	Deprecated	No text annotation
IL_8P4V_081	Deprecated	No text annotation
IL_8P4V_139	Deprecated	No text annotation
IL_8P4V_152	Deprecated	No text annotation
IL_8P4V_158	Deprecated	Triple sheared
IL_8P4V_171	Deprecated	C-loop with extra cWW pair
IL_8P4V_182	Deprecated	No text annotation
IL_8P4V_184	complementary	Isolated cWH basepair
IL_8P4V_195	Deprecated	Isolated non-canonical cWW pair
IL_8P4V_215	Deprecated	No text annotation
IL_8P4V_246	Deprecated	No text annotation
IL_8P4V_273	Deprecated	No text annotation
IL_8P4V_311	Deprecated	No text annotation
IL_8P4V_385	Deprecated	Triple sheared
IL_8P4V_401	Deprecated	No text annotation
IL_8P4V_410	Deprecated	No text annotation
IL_8P4V_416	complementary	No text annotation
IL_8P4V_434	Deprecated	Isolated non-canonical cWW pair
IL_8P4V_436	Deprecated	No text annotation
IL_8P4V_438	Deprecated	Isolated non-canonical cWW pair
IL_8P4V_439	Deprecated	No text annotation
IL_8P4V_441	Deprecated	No text annotation
IL_8P4V_444	Deprecated	No text annotation
IL_8P4V_445	Deprecated	No text annotation
IL_8P4V_447	Deprecated	No text annotation

Valid loops

Loop id	Location	Annotation; motif group	Mapped info
J3_8P4V_001	1/1/113:123, 1/1/149:158, 1/1/263:267	No text annotation	homologous J3_8P9A_042 J3_19664.1
J3_8P4V_002	1/1/113:124, 1/1/144:158, 1/1/263:267	No text annotation
J3_8P4V_003	1/1/185:189, 1/1/205:214, 1/1/226:231	No text annotation	homologous J3_8P9A_044 J3_75408.1
J3_8P4V_004	1/1/340:356, 1/1/363:368, 1/4/21:24	No text annotation	homologous J3_8P9A_045 J3_30040.2
J3_8P4V_005	1/1/369:376, 1/1/403:404, 1/4/19:20	No text annotation	geometric J3_5TBW_002 NA
J3_8P4V_006	1/1/369:379, 1/1/390:404, 1/4/19:20	No text annotation	homologous J3_8P9A_047 J3_92134.2
J3_8P4V_007	1/1/502:503, 1/1/588:597, 1/1/606:611	No text annotation	homologous J3_8P9A_048 J3_83726.1
J3_8P4V_008	1/1/814:820, 1/1/905:907, 1/1/923:926	No text annotation	homologous J3_8P9A_049 J3_64189.2
J3_8P4V_009	1/1/828:831, 1/1/863:867, 1/1/892:897	No text annotation	homologous J3_8P9A_050 J3_21998.1
J3_8P4V_010	1/1/986:987, 1/1/1062:1066, 1/1/1092:1098	No text annotation	homologous J3_8P9A_051 J3_09667.1
J3_8P4V_011	1/1/1479:1485, 1/1/1857:1859, 1/1/1871:1874	No text annotation	homologous J3_8P9A_053 J3_19545.2
J3_8P4V_012	1/1/1488:1491, 1/1/1837:1843, 1/1/1852:1854	No text annotation	homologous J3_8P9A_054 J3_19545.2
J3_8P4V_013	1/1/1526:1531, 1/1/1591:1595, 1/1/1612:1613	No text annotation	homologous J3_8C3A_052 NA
J3_8P4V_082	1/1/1631:1632, 1/1/1641:1645, 1/1/1810:1811	No text annotation	homologous J3_8P9A_087 J3_75962.2
J3_8P4V_015	1/1/1654:1658, 1/1/1791:1792, 1/1/1796:1801	No text annotation	homologous J3_8P9A_058 J3_12393.2
J3_8P4V_016	1/1/2432:2435, 1/1/2512:2517, 1/1/2590:2597	No text annotation	homologous J3_8P9A_059 J3_84052.1
J3_8P4V_017	1/1/2529:2533, 1/1/2546:2563, 1/1/2578:2581	No text annotation
J3_8P4V_018	1/1/2651:2653, 1/1/2754:2765, 1/1/2793:2798	No text annotation	homologous J3_8P9A_061 J3_20992.1
J3_8P4V_019	1/1/2664:2666, 1/1/2690:2692, 1/1/2701:2706	No text annotation	homologous J3_8P9A_062 J3_61124.2
J3_8P4V_020	1/1/2886:2889, 1/1/2914:2916, 1/1/2930:2936	No text annotation	homologous J3_8P9A_063 J3_62630.1
J3_8P4V_021	1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279	No text annotation	homologous J3_8P9A_064 J3_03190.1
J3_8P4V_022	1/1/3298:3300, 1/1/3314:3320, 1/1/3387:3390	No text annotation	geometric J3_5TBW_069 NA
J3_8P4V_023	1/3/9:14, 1/3/66:67, 1/3/111:112	No text annotation	homologous J3_8C3A_059 NA
J3_8P4V_024	1/4/44:45, 1/4/58:64, 1/4/96:100	No text annotation	homologous J3_8P9A_067 J3_35667.2
J3_8P4V_025	1/A/41:42, 1/A/433:439, 1/A/464:466	No text annotation	geometric J3_4V88_078 NA
J3_8P4V_026	1/A/41:48, 1/A/431:439, 1/A/464:466	No text annotation	homologous J3_8P9A_069 J3_46317.4
J3_8P4V_027	1/A/633:635, 1/A/861:865, 1/A/965:966	No text annotation	geometric J3_4V88_080 NA
J3_8P4V_028	1/A/633:635, 1/A/861:866, 1/A/962:966	No text annotation	homologous J3_8P9A_072 J3_17385.4
J3_8P4V_029	1/A/760:763, 1/A/773:775, 1/A/785:790	No text annotation	homologous J3_8P9A_073 J3_97642.1
J3_8P4V_083	1/A/881:884, 1/A/928:936, 1/A/943:947	No text annotation	homologous J3_8P9A_074 J3_76375.1
J3_8P4V_031	1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094	No text annotation	homologous J3_8P9A_075 J3_94999.1
J3_8P4V_032	1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616	No text annotation	homologous J3_8P9A_076 J3_25303.4
J3_8P4V_033	1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577	No text annotation	homologous J3_8P9A_077 J3_52655.4
J3_8P4V_034	1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458	No text annotation	homologous J3_8P9A_078 J3_83516.4
J3_8P4V_035	1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448	No text annotation	homologous J3_8C3A_041 NA
J3_8P4V_084	1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424	No text annotation	homologous J3_8P9A_080 J3_99563.1
J3_8P4V_037	1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322	No text annotation	homologous J3_8C3A_085 NA
J3_8P4V_038	1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415	No text annotation	geometric J3_4V88_040 NA
J3_8P4V_039	1/A/1336:1338, 1/A/1386:1391, 1/A/1407:1415	No text annotation	homologous J3_8C3A_086 NA
J3_8P4V_040	1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574	No text annotation	homologous J3_8P9A_084 J3_37047.6
J3_8P4V_041	1/AR/113:123, 1/AR/149:158, 1/AR/263:267	No text annotation	homologous J3_8P9A_042 J3_19664.1
J3_8P4V_042	1/AR/113:124, 1/AR/144:158, 1/AR/263:267	No text annotation
J3_8P4V_043	1/AR/185:189, 1/AR/205:214, 1/AR/226:231	No text annotation	homologous J3_8P9A_044 J3_75408.1
J3_8P4V_044	1/AR/340:356, 1/AR/363:368, 1/AT/21:24	No text annotation	homologous J3_8P9A_045 J3_30040.2
J3_8P4V_045	1/AR/369:376, 1/AR/403:404, 1/AT/19:20	No text annotation	geometric J3_5TBW_002 NA
J3_8P4V_046	1/AR/369:379, 1/AR/390:404, 1/AT/19:20	No text annotation	homologous J3_8P9A_047 J3_92134.2
J3_8P4V_047	1/AR/502:503, 1/AR/588:597, 1/AR/606:611	No text annotation	homologous J3_8P9A_048 J3_83726.1
J3_8P4V_048	1/AR/814:820, 1/AR/905:907, 1/AR/923:926	No text annotation	homologous J3_8P9A_049 J3_64189.2
J3_8P4V_049	1/AR/828:831, 1/AR/863:867, 1/AR/892:897	No text annotation	homologous J3_8P9A_050 J3_21998.1
J3_8P4V_050	1/AR/986:987, 1/AR/1062:1066, 1/AR/1092:1098	No text annotation	homologous J3_8P9A_051 J3_09667.1
J3_8P4V_051	1/AR/1230:1232, 1/AR/1256:1262, 1/AR/1277:1279	No text annotation	homologous J3_8P9A_052 J3_28621.5
J3_8P4V_052	1/AR/1479:1485, 1/AR/1857:1859, 1/AR/1871:1874	No text annotation	homologous J3_8P9A_053 J3_19545.2
J3_8P4V_053	1/AR/1488:1491, 1/AR/1837:1843, 1/AR/1852:1854	No text annotation	homologous J3_8P9A_054 J3_19545.2
J3_8P4V_054	1/AR/1526:1531, 1/AR/1591:1595, 1/AR/1612:1613	No text annotation	homologous J3_8P9A_055 J3_31965.2
J3_8P4V_055	1/AR/1631:1632, 1/AR/1641:1645, 1/AR/1810:1811	No text annotation	homologous J3_8C3A_054 NA
J3_8P4V_056	1/AR/1654:1658, 1/AR/1791:1792, 1/AR/1796:1801	No text annotation	homologous J3_8P9A_058 J3_12393.2
J3_8P4V_057	1/AR/2432:2435, 1/AR/2512:2516, 1/AR/2591:2597	No text annotation	geometric J3_4V9F_007 J3_97609.1
J3_8P4V_058	1/AR/2529:2532, 1/AR/2547:2563, 1/AR/2578:2581	No text annotation	homologous J3_8P9A_060 J3_28639.1
J3_8P4V_059	1/AR/2651:2653, 1/AR/2754:2765, 1/AR/2793:2798	No text annotation	homologous J3_8P9A_061 J3_20992.1
J3_8P4V_060	1/AR/2664:2666, 1/AR/2690:2692, 1/AR/2701:2706	No text annotation	homologous J3_8P9A_062 J3_61124.2
J3_8P4V_061	1/AR/2886:2889, 1/AR/2914:2916, 1/AR/2930:2936	No text annotation	homologous J3_8P9A_063 J3_62630.1
J3_8P4V_062	1/AR/3171:3176, 1/AR/3212:3220, 1/AR/3265:3279	No text annotation	homologous J3_8P9A_064 J3_03190.1
J3_8P4V_063	1/AR/3298:3300, 1/AR/3314:3318, 1/AR/3388:3390	No text annotation	homologous J3_8P9A_065 J3_81015.1
J3_8P4V_064	1/AS/9:14, 1/AS/66:67, 1/AS/111:112	No text annotation	homologous J3_8P9A_066 J3_12003.2
J3_8P4V_065	1/AT/44:45, 1/AT/58:64, 1/AT/96:100	No text annotation	homologous J3_8P9A_067 J3_35667.2
J3_8P4V_066	1/sR/41:42, 1/sR/433:439, 1/sR/464:466	No text annotation	geometric J3_4V88_078 NA
J3_8P4V_067	1/sR/41:48, 1/sR/431:439, 1/sR/464:466	No text annotation	homologous J3_8P9A_069 J3_46317.4
J3_8P4V_068	1/sR/633:635, 1/sR/861:865, 1/sR/965:966	No text annotation	geometric J3_4V88_080 NA
J3_8P4V_069	1/sR/633:635, 1/sR/861:866, 1/sR/962:966	No text annotation	homologous J3_8P9A_072 J3_17385.4
J3_8P4V_070	1/sR/760:763, 1/sR/773:775, 1/sR/785:790	No text annotation	homologous J3_8P9A_073 J3_97642.1
J3_8P4V_071	1/sR/881:884, 1/sR/928:936, 1/sR/943:947	No text annotation	homologous J3_8P9A_074 J3_76375.1
J3_8P4V_072	1/sR/1037:1039, 1/sR/1079:1083, 1/sR/1090:1094	No text annotation	homologous J3_8P9A_075 J3_94999.1
J3_8P4V_073	1/sR/1161:1164, 1/sR/1581:1587, 1/sR/1609:1616	No text annotation	homologous J3_8P9A_076 J3_25303.4
J3_8P4V_074	1/sR/1168:1171, 1/sR/1468:1470, 1/sR/1574:1577	No text annotation	homologous J3_8P9A_077 J3_52655.4
J3_8P4V_075	1/sR/1180:1187, 1/sR/1198:1209, 1/sR/1454:1458	No text annotation	homologous J3_8P9A_078 J3_83516.4
J3_8P4V_076	1/sR/1215:1220, 1/sR/1263:1267, 1/sR/1442:1448	No text annotation	homologous J3_8P9A_079 J3_87797.1
J3_8P4V_077	1/sR/1283:1288, 1/sR/1327:1332, 1/sR/1419:1424	No text annotation	homologous J3_8P9A_080 J3_99563.1
J3_8P4V_078	1/sR/1293:1294, 1/sR/1303:1306, 1/sR/1318:1322	No text annotation	homologous J3_8P9A_081 J3_76043.3
J3_8P4V_079	1/sR/1336:1338, 1/sR/1386:1389, 1/sR/1412:1415	No text annotation	geometric J3_4V88_040 NA
J3_8P4V_080	1/sR/1336:1338, 1/sR/1386:1391, 1/sR/1407:1415	No text annotation	homologous J3_8P9A_083 J3_88233.1
J3_8P4V_081	1/sR/1470:1474, 1/sR/1533:1540, 1/sR/1571:1574	No text annotation	homologous J3_8P9A_084 J3_37047.6
J4_8P4V_001	1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319	No text annotation	homologous J4_8P9A_012 J4_45801.6
J4_8P4V_002	1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231	No text annotation	homologous J4_8P9A_013 J4_12410.1
J4_8P4V_003	1/1/1451:1457, 1/1/1475:1476, 1/1/1877:1880, 1/1/2352:2353	No text annotation	homologous J4_8P9A_014 J4_87855.1
J4_8P4V_004	1/1/1492:1496, 1/1/1520:1525, 1/1/1614:1615, 1/1/1829:1836	No text annotation	homologous J4_8P9A_015 J4_69051.6
J4_8P4V_005	1/1/1674:1675, 1/1/1693:1694, 1/1/1752:1753, 1/1/1772:1773	No text annotation	homologous J4_8C3A_005 NA
J4_8P4V_006	1/1/2130:2134, 1/1/2146:2150, 1/1/2186:2190, 1/1/2317:2322	No text annotation	homologous J4_8P9A_017 J4_07509.2
J4_8P4V_007	1/1/2192:2194, 1/1/2248:2249, 1/1/2267:2276, 1/1/2310:2315	No text annotation	homologous J4_8C3A_007 NA
J4_8P4V_008	1/1/2654:2658, 1/1/2712:2716, 1/1/2740:2742, 1/1/2751:2753	No text annotation	homologous J4_8P9A_019 J4_04930.6
J4_8P4V_009	1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136	No text annotation	homologous J4_8P9A_020 J4_65356.1
J4_8P4V_010	1/A/31:35, 1/A/473:516, 1/A/536:546, 1/A/592:595	No text annotation
J4_8P4V_011	1/A/99:107, 1/A/307:309, 1/A/357:361, 1/A/383:384	No text annotation	homologous J4_8P9A_021 J4_15241.1
J4_8P4V_012	1/A/622:624, 1/A/975:980, 1/A/1021:1032, 1/A/1103:1104	No text annotation	homologous J4_8P9A_022 J4_61885.6
J4_8P4V_013	1/AR/112:113, 1/AR/267:272, 1/AR/293:299, 1/AR/316:319	No text annotation	homologous J4_8P9A_012 J4_45801.6
J4_8P4V_014	1/AR/185:189, 1/AR/205:208, 1/AR/212:214, 1/AR/226:231	No text annotation	homologous J4_8P9A_013 J4_12410.1
J4_8P4V_015	1/AR/1451:1457, 1/AR/1475:1476, 1/AR/1877:1880, 1/AR/2352:2353	No text annotation	homologous J4_8P9A_014 J4_87855.1
J4_8P4V_016	1/AR/1492:1496, 1/AR/1520:1525, 1/AR/1614:1615, 1/AR/1829:1836	No text annotation	homologous J4_8P9A_015 J4_69051.6
J4_8P4V_017	1/AR/1674:1675, 1/AR/1693:1694, 1/AR/1752:1753, 1/AR/1772:1773	No text annotation	homologous J4_8P9A_016 J4_24280.2
J4_8P4V_018	1/AR/2130:2134, 1/AR/2146:2150, 1/AR/2186:2190, 1/AR/2317:2322	No text annotation	homologous J4_8P9A_017 J4_07509.2
J4_8P4V_019	1/AR/2192:2194, 1/AR/2248:2249, 1/AR/2267:2276, 1/AR/2310:2315	No text annotation	homologous J4_8P9A_018 J4_93343.1
J4_8P4V_020	1/AR/2654:2658, 1/AR/2712:2716, 1/AR/2740:2742, 1/AR/2751:2753	No text annotation	homologous J4_8P9A_019 J4_04930.6
J4_8P4V_021	1/AR/3010:3012, 1/AR/3042:3043, 1/AR/3098:3100, 1/AR/3134:3136	No text annotation	homologous J4_8P9A_020 J4_65356.1
J4_8P4V_022	1/sR/99:107, 1/sR/307:309, 1/sR/357:361, 1/sR/383:384	No text annotation	homologous J4_8P9A_021 J4_15241.1
J4_8P4V_023	1/sR/622:624, 1/sR/975:980, 1/sR/1021:1032, 1/sR/1103:1104	No text annotation	homologous J4_8P9A_022 J4_61885.6
J5_8P4V_001	1/1/20:22, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139	No text annotation	homologous J5_8P9A_010 J5_01737.2
J5_8P4V_002	1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437	No text annotation	homologous J5_8P9A_011 J5_63811.1
J5_8P4V_003	1/1/675:678, 1/1/702:706, 1/1/713:721, 1/1/749:751, 1/1/782:787	No text annotation	homologous J5_8P9A_012 J5_23272.1
J5_8P4V_004	1/1/1906:1914, 1/1/1938:1939, 1/1/2109:2110, 1/1/2114:2122, 1/1/2331:2333	No text annotation	homologous J5_8P9A_013 J5_62523.6
J5_8P4V_005	1/1/2399:2406, 1/1/2815:2823, 1/1/2867:2876, 1/1/2951:2957, 1/1/2975:2980	No text annotation
J5_8P4V_006	1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2651, 1/1/2798:2804	No text annotation	homologous J5_8P9A_015 J5_08912.1
J5_8P4V_007	1/A/54:57, 1/A/90:97, 1/A/386:388, 1/A/409:411, 1/A/422:426	No text annotation	homologous J5_8P9A_017 J5_59910.6
J5_8P4V_008	1/A/124:143, 1/A/172:182, 1/A/203:204, 1/A/263:265, 1/A/289:293	No text annotation
J5_8P4V_009	1/A/124:143, 1/A/172:182, 1/A/203:204, 1/A/263:267, 1/A/288:293	No text annotation
J5_8P4V_010	1/A/636:641, 1/A/693:698, 1/A/740:744, 1/A/807:817, 1/A/854:860	No text annotation
J5_8P4V_011	1/AR/20:22, 1/AT/35:42, 1/AT/102:107, 1/AT/115:116, 1/AT/137:139	No text annotation	homologous J5_8P9A_010 J5_01737.2
J5_8P4V_012	1/AR/658:663, 1/AR/799:802, 1/AR/941:944, 1/AR/1375:1376, 1/AR/1431:1437	No text annotation	homologous J5_8P9A_011 J5_63811.1
J5_8P4V_013	1/AR/675:678, 1/AR/702:706, 1/AR/713:721, 1/AR/749:751, 1/AR/782:787	No text annotation	homologous J5_8P9A_012 J5_23272.1
J5_8P4V_014	1/AR/1906:1914, 1/AR/1938:1939, 1/AR/2109:2110, 1/AR/2114:2122, 1/AR/2331:2333	No text annotation	homologous J5_8P9A_013 J5_62523.6
J5_8P4V_015	1/AR/2399:2406, 1/AR/2815:2823, 1/AR/2867:2875, 1/AR/2952:2957, 1/AR/2975:2980	No text annotation
J5_8P4V_016	1/AR/2416:2419, 1/AR/2611:2614, 1/AR/2627:2628, 1/AR/2650:2651, 1/AR/2798:2804	No text annotation	homologous J5_8P9A_015 J5_08912.1
J5_8P4V_017	1/sR/31:35, 1/sR/473:479, 1/sR/509:516, 1/sR/536:546, 1/sR/592:595	No text annotation
J5_8P4V_018	1/sR/54:57, 1/sR/90:97, 1/sR/386:388, 1/sR/409:411, 1/sR/422:426	No text annotation	homologous J5_8P9A_017 J5_59910.6
J5_8P4V_019	1/sR/636:641, 1/sR/693:698, 1/sR/740:744, 1/sR/807:817, 1/sR/854:860	No text annotation
J6_8P4V_001	1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/4/32:35	No text annotation
J6_8P4V_002	1/1/2416:2419, 1/1/2611:2614, 1/1/2627:2628, 1/1/2650:2653, 1/1/2754:2765, 1/1/2793:2804	No text annotation
J6_8P4V_003	1/AR/22:27, 1/AR/58:68, 1/AR/75:79, 1/AR/106:110, 1/AR/321:331, 1/AT/32:35	No text annotation
J6_8P4V_004	1/AR/2416:2419, 1/AR/2611:2614, 1/AR/2627:2628, 1/AR/2650:2653, 1/AR/2754:2765, 1/AR/2793:2804	No text annotation
J7_8P4V_001	1/1/949:954, 1/1/967:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370	No text annotation
J7_8P4V_002	1/AR/949:954, 1/AR/967:968, 1/AR/1114:1117, 1/AR/1141:1146, 1/AR/1157:1161, 1/AR/1338:1339, 1/AR/1365:1370	No text annotation

Problematic loops

loop id	Problem	Sequence
J3_8P4V_014	Deprecated	No text annotation
J3_8P4V_030	Deprecated	No text annotation
J3_8P4V_036	Deprecated	No text annotation

loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/package.js

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Jmol JavaScript applet jmolApplet0__11136754135834__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__11136754135834__)

vwrOptions:

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setting document base to "https://rna.bgsu.edu/rna3dhub/pdb/8P4V/motifs"

Jmol Version: 14.4.4_2016.04.25 2016-04-26 17:41

java.vendor: Java2Script (HTML5)

java.version: 2016-04-21 14:47:41 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/corescript.z.js

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor #f5f5f5

backgroundColor = "#f5f5f5"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__11136754135834__ ready

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loadScript https://rna.bgsu.edu/rna3dhub//js/jsmol/j2s//core/coretext.z.js

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script 3 started

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script 4 started

Script completed

Jmol script terminated

Coloring options: Nucleotide numbers

8P4V Hairpin, Internal, and multi-helix Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops