HL_8P4V_066

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8P4V|1|1|A|3243, 8P4V|1|1|A|3244, 8P4V|1|1|G|3246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_066 not in the Motif Atlas

Homologous match to HL_8P9A_180

Geometric discrepancy: 0.1069

The information below is about HL_8P9A_180

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

8P4V|1|1|C|3240
8P4V|1|1|G|3241
8P4V|1|1|G|3242
8P4V|1|1|A|3243
8P4V|1|1|A|3244
8P4V|1|1|A|3245
8P4V|1|1|G|3246
8P4V|1|1|G|3247

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain w

60S ribosomal protein L16-A