HL_8P4V_068

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8P4V|1|1|U|3351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_068 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.4927

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8P4V|1|1|C|3350
8P4V|1|1|U|3351
8P4V|1|1|U|3352
8P4V|1|1|G|3353

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L22-A

Chain J

40S ribosomal protein S8-A