HL_8P4V_086

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8P4V|1|A|A|452, 8P4V|1|A|U|454, 8P4V|1|A|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_086 not in the Motif Atlas

Homologous match to HL_8P9A_201

Geometric discrepancy: 0.1534

The information below is about HL_8P9A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8P4V|1|A|U|450
8P4V|1|A|A|451
8P4V|1|A|A|452
8P4V|1|A|U|453
8P4V|1|A|U|454
8P4V|1|A|C|455
8P4V|1|A|A|456

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain Z

40S ribosomal protein S24-A