HL_8P4V_089

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

35 nucleotides

Bulged bases

8P4V|1|A|C|709, 8P4V|1|A|U|718, 8P4V|1|A|U|719, 8P4V|1|A|U|721, 8P4V|1|A|U|728, 8P4V|1|A|G|729, 8P4V|1|A|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|A|G|702
8P4V|1|A|G|703
8P4V|1|A|C|704
8P4V|1|A|U|705
8P4V|1|A|A|706
8P4V|1|A|A|707
8P4V|1|A|C|708
8P4V|1|A|C|709
8P4V|1|A|U|710
8P4V|1|A|U|711
8P4V|1|A|G|712
8P4V|1|A|A|713
8P4V|1|A|G|714
8P4V|1|A|U|715
8P4V|1|A|C|716
8P4V|1|A|C|717
8P4V|1|A|U|718
8P4V|1|A|U|719
8P4V|1|A|G|720
8P4V|1|A|U|721
8P4V|1|A|G|722
8P4V|1|A|G|723
8P4V|1|A|C|724
8P4V|1|A|U|725
8P4V|1|A|C|726
8P4V|1|A|U|727
8P4V|1|A|U|728
8P4V|1|A|G|729
8P4V|1|A|G|730
8P4V|1|A|C|731
8P4V|1|A|G|732
8P4V|1|A|A|733
8P4V|1|A|A|734
8P4V|1|A|C|735
8P4V|1|A|C|736

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A