HL_8P4V_108

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGGAUCUGCUUAGAGAAGGGGGCAACUCCAUCUCAGAGCGGAGAAU

Length

46 nucleotides

Bulged bases

8P4V|1|A|C|1700, 8P4V|1|A|U|1704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|A|A|1678
8P4V|1|A|G|1679
8P4V|1|A|G|1680
8P4V|1|A|A|1681
8P4V|1|A|U|1682
8P4V|1|A|C|1683
8P4V|1|A|U|1684
8P4V|1|A|G|1685
8P4V|1|A|C|1686
8P4V|1|A|U|1687
8P4V|1|A|U|1688
8P4V|1|A|A|1689
8P4V|1|A|G|1690
8P4V|1|A|A|1691
8P4V|1|A|G|1692
8P4V|1|A|A|1693
8P4V|1|A|A|1694
8P4V|1|A|G|1695
8P4V|1|A|G|1696
8P4V|1|A|G|1697
8P4V|1|A|G|1698
8P4V|1|A|G|1699
8P4V|1|A|C|1700
8P4V|1|A|A|1701
8P4V|1|A|A|1702
8P4V|1|A|C|1703
8P4V|1|A|U|1704
8P4V|1|A|C|1705
8P4V|1|A|C|1706
8P4V|1|A|A|1707
8P4V|1|A|U|1708
8P4V|1|A|C|1709
8P4V|1|A|U|1710
8P4V|1|A|C|1711
8P4V|1|A|A|1712
8P4V|1|A|G|1713
8P4V|1|A|A|1714
8P4V|1|A|G|1715
8P4V|1|A|C|1716
8P4V|1|A|G|1717
8P4V|1|A|G|1718
8P4V|1|A|A|1719
8P4V|1|A|G|1720
8P4V|1|A|A|1721
8P4V|1|A|A|1722
8P4V|1|A|U|1723

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

60S ribosomal protein L24-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A