HL_8P4V_121

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

8P4V|1|AR|U|545, 8P4V|1|AR|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_121 not in the Motif Atlas

Homologous match to HL_8P9A_124

Geometric discrepancy: 0.1045

The information below is about HL_8P9A_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P4V|1|AR|G|542
8P4V|1|AR|C|543
8P4V|1|AR|C|544
8P4V|1|AR|U|545
8P4V|1|AR|C|546
8P4V|1|AR|G|547
8P4V|1|AR|G|548
8P4V|1|AR|U|549

Current chains

Chain AR

25S ribosomal RNA

Nearby chains