HL_8P4V_123

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8P4V|1|AR|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_123 not in the Motif Atlas

Homologous match to HL_8P9A_126

Geometric discrepancy: 0.0577

The information below is about HL_8P9A_126

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8P4V|1|AR|U|640
8P4V|1|AR|C|641
8P4V|1|AR|U|642
8P4V|1|AR|U|643
8P4V|1|AR|G|644
8P4V|1|AR|A|645
8P4V|1|AR|A|646
8P4V|1|AR|A|647
8P4V|1|AR|C|648
8P4V|1|AR|A|649

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain DC

60S ribosomal protein L28

Chain DG

60S ribosomal protein L32