HL_8P4V_132

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8P4V|1|AR|A|1025, 8P4V|1|AR|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_132 not in the Motif Atlas

Geometric match to HL_5FQ5_003

Geometric discrepancy: 0.3745

The information below is about HL_5FQ5_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8P4V|1|AR|C|1023
8P4V|1|AR|G|1024
8P4V|1|AR|A|1025
8P4V|1|AR|A|1026
8P4V|1|AR|A|1027
8P4V|1|AR|U|1028
8P4V|1|AR|G|1029

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

Large ribosomal subunit protein uL5B

Chain c5

40S ribosomal protein S15

Chain sM

Suppressor protein STM1