HL_8P4V_152

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8P4V|1|AR|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_152 not in the Motif Atlas

Homologous match to HL_8P9A_156

Geometric discrepancy: 0.0983

The information below is about HL_8P9A_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_16651.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8P4V|1|AR|G|2110
8P4V|1|AR|G|2111
8P4V|1|AR|U|2112
8P4V|1|AR|A|2113
8P4V|1|AR|C|2114

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CY

60S ribosomal protein L24-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA