HL_8P4V_155

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_155 not in the Motif Atlas

Homologous match to HL_8P9A_159

Geometric discrepancy: 0.0797

The information below is about HL_8P9A_159

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8P4V|1|AR|A|2220
8P4V|1|AR|G|2221
8P4V|1|AR|A|2222
8P4V|1|AR|A|2223
8P4V|1|AR|A|2224
8P4V|1|AR|U|2225

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DK

60S ribosomal protein L36-A

Chain DQ

60S ribosomal protein L42-A