3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
8P4V|1|AR|A|2372, 8P4V|1|AR|A|2373, 8P4V|1|AR|C|2374
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P4V_158 not in the Motif Atlas
Homologous match to HL_8P9A_162
Geometric discrepancy: 0.0563
The information below is about HL_8P9A_162
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.2
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
8

Unit IDs

8P4V|1|AR|G|2369
8P4V|1|AR|G|2370
8P4V|1|AR|G|2371
8P4V|1|AR|A|2372
8P4V|1|AR|A|2373
8P4V|1|AR|C|2374
8P4V|1|AR|G|2375
8P4V|1|AR|G|2376
8P4V|1|AR|G|2377
8P4V|1|AR|C|2378

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CE
60S ribosomal protein L3
Chain DG
60S ribosomal protein L32

Coloring options:


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