HL_8P4V_165
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UUCAGUGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_165 not in the Motif Atlas
- Homologous match to HL_8P9A_169
- Geometric discrepancy: 0.0634
- The information below is about HL_8P9A_169
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_80599.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P4V|1|AR|U|2724
8P4V|1|AR|U|2725
8P4V|1|AR|C|2726
8P4V|1|AR|A|2727
8P4V|1|AR|G|2728
8P4V|1|AR|U|2729
8P4V|1|AR|G|2730
8P4V|1|AR|U|2731
8P4V|1|AR|G|2732
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CS
- 60S ribosomal protein L18-A
- Chain CV
- 60S ribosomal protein L21-A
- Chain DC
- 60S ribosomal protein L28
- Chain DD
- 60S ribosomal protein L29
- Chain DQ
- 60S ribosomal protein L42-A
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