HL_8P4V_177

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8P4V|1|AR|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_177 not in the Motif Atlas

Homologous match to HL_8P9A_181

Geometric discrepancy: 0.0634

The information below is about HL_8P9A_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P4V|1|AR|G|3303
8P4V|1|AR|U|3304
8P4V|1|AR|A|3305
8P4V|1|AR|U|3306
8P4V|1|AR|A|3307
8P4V|1|AR|C|3308
8P4V|1|AR|G|3309
8P4V|1|AR|A|3310
8P4V|1|AR|C|3311

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DF

60S ribosomal protein L31-A