3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
ACAGGGCCCAUUCGGGUCUUGU
Length
22 nucleotides
Bulged bases
8P4V|1|sR|G|487, 8P4V|1|sR|C|489, 8P4V|1|sR|U|493, 8P4V|1|sR|U|494, 8P4V|1|sR|C|495
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P4V_197 not in the Motif Atlas
Homologous match to HL_8P9A_202
Geometric discrepancy: 0.0573
The information below is about HL_8P9A_202
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8P4V|1|sR|A|483
8P4V|1|sR|C|484
8P4V|1|sR|A|485
8P4V|1|sR|G|486
8P4V|1|sR|G|487
8P4V|1|sR|G|488
8P4V|1|sR|C|489
8P4V|1|sR|C|490
8P4V|1|sR|C|491
8P4V|1|sR|A|492
8P4V|1|sR|U|493
8P4V|1|sR|U|494
8P4V|1|sR|C|495
8P4V|1|sR|G|496
8P4V|1|sR|G|497
8P4V|1|sR|G|498
8P4V|1|sR|U|499
8P4V|1|sR|C|500
8P4V|1|sR|U|501
8P4V|1|sR|U|502
8P4V|1|sR|G|503
8P4V|1|sR|U|504

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain e0
40S ribosomal protein S30-A
Chain s9
40S ribosomal protein S9-A

Coloring options:


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