HL_8P4V_205

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_205 not in the Motif Atlas

Homologous match to HL_8P9A_210

Geometric discrepancy: 0.0487

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8P4V|1|sR|C|937
8P4V|1|sR|G|938
8P4V|1|sR|A|939
8P4V|1|sR|A|940
8P4V|1|sR|A|941
8P4V|1|sR|G|942

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c3

40S ribosomal protein S13

Chain d6

Small ribosomal subunit protein eS26B