HL_8P4V_207

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8P4V|1|sR|U|1058, 8P4V|1|sR|U|1059, 8P4V|1|sR|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_207 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.2784

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P4V|1|sR|U|1055
8P4V|1|sR|U|1056
8P4V|1|sR|U|1057
8P4V|1|sR|U|1058
8P4V|1|sR|U|1059
8P4V|1|sR|U|1060
8P4V|1|sR|A|1061
8P4V|1|sR|A|1062
8P4V|1|sR|U|1063
8P4V|1|sR|G|1064

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A