HL_8P4V_211
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8P4V|1|sR|G|1243, 8P4V|1|sR|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_211 not in the Motif Atlas
- Homologous match to HL_8P9A_216
- Geometric discrepancy: 0.0666
- The information below is about HL_8P9A_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
8P4V|1|sR|A|1238
8P4V|1|sR|U|1239
8P4V|1|sR|U|1240
8P4V|1|sR|G|1241
8P4V|1|sR|A|1242
8P4V|1|sR|G|1243
8P4V|1|sR|A|1244
8P4V|1|sR|G|1245
8P4V|1|sR|C|1246
8P4V|1|sR|U|1247
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain c5
- 40S ribosomal protein S15
- Chain d9
- Small ribosomal subunit protein uS14A
Coloring options: