HL_8P85_023
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCGAAAUGA
- Length
- 9 nucleotides
- Bulged bases
- 8P85|1|1|U|1028
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P85_023 not in the Motif Atlas
- Geometric match to HL_9DE7_001
- Geometric discrepancy: 0.3469
- The information below is about HL_9DE7_001
- Detailed Annotation
- GNRA with extra near cWW
- Broad Annotation
- GNRA
- Motif group
- HL_87306.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8P85|1|1|U|1022
8P85|1|1|C|1023
8P85|1|1|G|1024
8P85|1|1|A|1025
8P85|1|1|A|1026
8P85|1|1|A|1027
8P85|1|1|U|1028
8P85|1|1|G|1029
8P85|1|1|A|1030
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q
- 40S ribosomal protein S15
- Chain g
- Ubiquitin
- Chain i
- Suppressor protein STM1
- Chain s
- Large ribosomal subunit protein uL5B
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