HL_8P85_077

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8P85|1|A|U|158, 8P85|1|A|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_077 not in the Motif Atlas

Geometric match to HL_8P9A_192

Geometric discrepancy: 0.0734

The information below is about HL_8P9A_192

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8P85|1|A|G|154
8P85|1|A|U|155
8P85|1|A|A|156
8P85|1|A|A|157
8P85|1|A|U|158
8P85|1|A|U|159
8P85|1|A|C|160

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S6-A

Chain Z

40S ribosomal protein S24-A