HL_8P85_079

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8P85|1|A|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_079 not in the Motif Atlas

Geometric match to HL_8CRE_196

Geometric discrepancy: 0.1261

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

8P85|1|A|G|243
8P85|1|A|A|244
8P85|1|A|U|245
8P85|1|A|G|246
8P85|1|A|A|247
8P85|1|A|U|248
8P85|1|A|U|249
8P85|1|A|C|250

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain M

40S ribosomal protein S11-A