HL_8P85_173

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8P85|1|AR|G|3116, 8P85|1|AR|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_173 not in the Motif Atlas

Geometric match to HL_8P9A_178

Geometric discrepancy: 0.0229

The information below is about HL_8P9A_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

8P85|1|AR|C|3110
8P85|1|AR|U|3111
8P85|1|AR|G|3112
8P85|1|AR|A|3113
8P85|1|AR|A|3114
8P85|1|AR|C|3115
8P85|1|AR|G|3116
8P85|1|AR|C|3117
8P85|1|AR|C|3118
8P85|1|AR|U|3119
8P85|1|AR|C|3120
8P85|1|AR|U|3121
8P85|1|AR|A|3122
8P85|1|AR|A|3123
8P85|1|AR|G|3124

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CQ

60S ribosomal protein L16-A

Chain DO

Ubiquitin-60S ribosomal protein L40