HL_8P9A_178

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8P9A|1|AR|G|3116, 8P9A|1|AR|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8P9A|1|AR|C|3110
8P9A|1|AR|U|3111
8P9A|1|AR|G|3112
8P9A|1|AR|A|3113
8P9A|1|AR|A|3114
8P9A|1|AR|C|3115
8P9A|1|AR|G|3116
8P9A|1|AR|C|3117
8P9A|1|AR|C|3118
8P9A|1|AR|U|3119
8P9A|1|AR|C|3120
8P9A|1|AR|U|3121
8P9A|1|AR|A|3122
8P9A|1|AR|A|3123
8P9A|1|AR|G|3124

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CQ

60S ribosomal protein L16-A

Chain DO

Ubiquitin-60S ribosomal protein L40