HL_8P85_195

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8P85|1|sR|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_195 not in the Motif Atlas

Geometric match to HL_8P9A_200

Geometric discrepancy: 0.0413

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8P85|1|sR|C|414
8P85|1|sR|C|415
8P85|1|sR|A|416
8P85|1|sR|A|417
8P85|1|sR|G|418
8P85|1|sR|G|419

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CX

60S ribosomal protein L23-A

Chain s6

40S ribosomal protein S6-A