HL_8P85_215

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

8P85|1|sR|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_215 not in the Motif Atlas

Geometric match to HL_8P9A_220

Geometric discrepancy: 0.0306

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

8P85|1|sR|U|1396
8P85|1|sR|U|1397
8P85|1|sR|U|1398
8P85|1|sR|C|1399
8P85|1|sR|A|1400
8P85|1|sR|A|1401
8P85|1|sR|G|1402

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain d8

40S ribosomal protein S28-A